Submodule extensions

Depending on what you had done before adding new items to the
internal ignores list, it was possible for the cache of ignore
data to be uninitialized.

This is a big redesign of the git_submodule_status API and the
implementation of the redesigned API.  It also fixes a number of
bugs that I found in other parts of the submodule API while
writing the tests for the status part.

This also fixes a couple of bugs in the iterators that had not
been noticed before - one with iterating when there is a gitlink
(i.e. separate-work-dir) and one where I was treating anything
even vaguely submodule-like as a submodule, more aggressively
than core git does.

This replaces the old submodule API with a new extended API that
supports most of the things that can be done with `git submodule`.

This fills out the ignore API and adds tests.

Clone

This updates all the `foreach()` type functions across the library
that take callbacks from the user to have a consistent behavior.
The rules are:

* A callback terminates the loop by returning any non-zero value
* Once the callback returns non-zero, it will not be called again
  (i.e. the loop stops all iteration regardless of state)
* If the callback returns non-zero, the parent fn returns GIT_EUSER
* Although the parent returns GIT_EUSER, no error will be set in
  the library and `giterr_last()` will return NULL if called.

This commit makes those changes across the library and adds tests
for most of the iteration APIs to make sure that they follow the
above rules.

Replace with the contents of 
git_index_read_tree_with_stats() and improve
documentation comments.