[ci skip]

Closes #5931

Closes #5872

Add user repository integrity check rake task

Corrupt repositories and stuck lock files can cause weird issues in
GitLab. Often we know which user is having these problems and then we
have to go hunt down which repository is causing it. Several times
recently that involved me running queries in the rails console to get
an array of projects and then writing a quick Ruby script to loop
through and run `git fsck`. This last time I also had to check for the
existence of `config.lock` and ref lock files. 

This rake task will eliminate all of those steps and allow an admin to
simply specify a username.

I also added the lock file checks to the existing `gitlab:repo:check`
task which goes through all projects. 

See merge request !2080

Ci Project migrate

- This doesn't migrate: allow_git_fetch, coverage_regex, timeout. Since this are project configuration settings I would propose to migrate them to `.gitlab-ci.yml`.
- This requires offline migrations.
- It simplifies database models making all CI objects to be attached to: Project.
- It removes Ci::Project, but makes /ci/projects working by adding method: Project.find_by_ci_id for backward compatibility (badges, triggers).
- We should add default `timeout` to Application Settings.
- It misses specs.
- It is based on ci-services-migrate for now.
- It removes CI events.
- It removes administrator CI projects overview.
- It removes CI application settings.

In 8.4 or 8.5 we can remove redundant tables and columns.


See merge request !1987

Closes #3649

[ci skip]