Fallback describes the mechanism, while unspecified explains what the
user is thinking.

This lets us specify in the status call which ignore rules we want to
use (optionally falling back to whatever the submodule has in its
configuration).

This removes one of the reasons for having `_set_ignore()` set the value
in-memory. We re-use the `IGNORE_RESET` value for this as it is no
longer relevant but has a similar purpose to `IGNORE_FALLBACK`.

Similarly, we remove `IGNORE_DEFAULT` which does not have use outside of
initializers and move that to fall back to the configuration as well.

As submodules are becomes more like values, we should not let a status
check to update its properties. Instead of taking a submodule, have
status take a repo and submodule name.

Introduce a new binary diff callback to provide the actual binary
delta contents to callers.  Create this data from the diff contents
(instead of directly from the ODB) to support binary diffs including
the workdir, not just things coming out of the ODB.

For consistency with the rest of the library, where an opt is an
options *structure*.

Diff and status do not want core.safecrlf to actually raise an
error regardless of the setting, so this extends the filter API
with an additional options flags parameter and adds a flag so that
filters can be applied with GIT_FILTER_OPT_ALLOW_UNSAFE, indicating
that unsafe filter application should be downgraded from a failure
to a warning.

This cleans up some places I missed that could hold onto submodule
references and cleans up the way in which the repository cache is
both reloaded and released so that existing submodule references
aren't destroyed inappropriately.

`git_submodule` objects were already refcounted internally in case
the submodule name was different from the path at which it was
stored.  This makes that refcounting externally used as well, so
`git_submodule_lookup` and `git_submodule_add_setup` return an
object that requires a `git_submodule_free` when done.

This adds `git_diff_buffers` and `git_patch_from_buffers`.  This
also includes a bunch of internal refactoring to increase the
shared code between these functions and the blob-to-blob and
blob-to-buffer APIs, as well as some higher level assert helpers
in the tests to also remove redundancy.