The diff code was using an "ignored_prefix" directory to track if
a parent directory was ignored that contained untracked files
alongside tracked files. Unfortunately, when negative ignore rules
were used for directories inside ignored parents, the wrong rules
were applied to untracked files inside the negatively ignored
child directories.

This commit moves the logic for ignore containment into the workdir
iterator (which is a better place for it), so the ignored-ness of
a directory is contained in the frame stack during traversal.  This
allows a child directory to override with a negative ignore and yet
still restore the ignored state of the parent when we traverse out
of the child.

Along with this, there are some problems with "directory only"
ignore rules on container directories.  Given "a/*" and "!a/b/c/"
(where the second rule is a directory rule but the first rule is
just a generic prefix rule), then the directory only constraint
was having "a/b/c/d/file" match the first rule and not the second.
This was fixed by having ignore directory-only rules test a rule
against the prefix of a file with LEADINGDIR enabled.

Lastly, spot checks for ignores using `git_ignore_path_is_ignored`
were tested from the top directory down to the bottom to deal with
the containment problem, but this is wrong. We have to test bottom
to top so that negative subdirectory rules will be checked before
parent ignore rules.

This does change the behavior of some existing tests, but it seems
only to bring us more in line with core Git, so I think those
changes are acceptable.

This is a proposed adjustment to the trace APIs.  This makes the
trace levels into a bitmask so that they can be selectively enabled
and adds a callback-level payload, plus a message-level payload.

This makes it easier for me to a GIT_TRACE_PERF callbacks that
are simply bypassed if the PERF level is not set.

This adds an option to refresh the stat cache while generating
status.  It also rips out the GIT_PERF stuff I had an makes use
of the trace API to keep statistics about what happens during diff.

When we think the stat cache in the index seems valid and the size
or mode of a file has definitely changed, then don't bother trying
to recalculate the OID of the workdir bits to confirm that it is
modified - just accept that it is modified.

This can result in files that show as modified with no actual diff,
but the behavior actually appears to match Git on the command line.

This also includes a minor optimization to not perform a submodule
lookup on the ".git" directory itself.

When considering status of untracked directories, if we find an
explicitly ignored item, even if it is a directory, treat the
parent as an IGNORED item.  It was accidentally being treated as
an EMPTY item because we were not looking into the ignored subdir.

In the iterator, distinguish between ignores and empty directories
so that diff and status can ignore empty directories, but checkout
and stash can treat them as untracked items.

When diff finds an untracked directory, it emulates Git behavior
by looking inside the directory to see if there are any untracked
items inside it. If there are only ignored items inside the dir,
then diff considers it ignored, even if there is no direct ignore
rule for it.

Checkout was not copying this behavior - when it found an untracked
directory, it just treated it as untracked.  Unfortunately, when
combined with GIT_CHECKOUT_REMOVE_UNTRACKED, this made is seem that
checkout (and stash, which uses checkout) was removing ignored
items when you had only asked it to remove untracked ones.

This commit moves the logic for advancing past an untracked dir
while scanning for non-ignored items into an iterator helper fn,
and uses that for both diff and checkout.

Clear up some of the various "find" functions and the snapshot
API naming to be things I like more.