Strict aliasing rules dictate that for most data types, you are not
allowed to cast them to another data type and then access the casted
pointers. While this works just fine for most compilers, technically we
end up in undefined behaviour when we hurt that rule.

Our current refcounting code makes heavy use of casting and thus
violates that rule. While we didn't have any problems with that code,
Travis started spitting out a lot of warnings due to a change in their
toolchain. In the refcounting case, the code is also easy to fix:
as all refcounting-statements are actually macros, we can just access
the `rc` field directly instead of casting.

There are two outliers in our code where that doesn't work. Both the
`git_diff` and `git_patch` structures have specializations for generated
and parsed diffs/patches, which directly inherit from them. Because of
that, the refcounting code is only part of the base structure and not of
the children themselves. We can help that by instead passing their base
into `GIT_REFCOUNT_INC`, though.

Our current configuration logic is completely oblivious of any
repository, but only cares for actual file paths. Unfortunately, we are
forced to break this assumption by the introduction of conditional
includes, which are evaluated in the context of a repository. Right now,
only one conditional exists with "gitdir:" -- it will only include the
configuration if the current repository's git directory matches the
value passed to "gitdir:".

To support these conditionals, we have to break our API and make the
repository available when opening a configuration file. This commit
extends the `open` call of configuration backends to include another
repository and adjusts existing code to have it available. This includes
the user-visible functions `git_config_add_file_ondisk` and
`git_config_add_backend`.

Several functions to retrieve variables from a repository only return
immutable values, which allows us to actually constify the passed-in
repository parameter. Do so to help a later patch, which will only have
access to a constant repository.

Next to including several files, our "common.h" header also declares
various macros which are then used throughout the project. As such, we
have to make sure to always include this file first in all
implementation files. Otherwise, we might encounter problems or even
silent behavioural differences due to macros or defines not being
defined as they should be. So in fact, our header and implementation
files should make sure to always include "common.h" first.

This commit does so by establishing a common include pattern. Header
files inside of "src" will now always include "common.h" as its first
other file, separated by a newline from all the other includes to make
it stand out as special. There are two cases for the implementation
files. If they do have a matching header file, they will always include
this one first, leading to "common.h" being transitively included as
first file. If they do not have a matching header file, they instead
include "common.h" as first file themselves.

This fixes the outlined problems and will become our standard practice
for header and source files inside of the "src/" from now on.

When in an in-memory repository - without a configuration file - do not
fail to create a configuration object.

Disambiguate error values: return `GIT_ENOTFOUND` when the item cannot
exist in the repository (perhaps because the repository is inmemory or
otherwise not backed by a filesystem), return `-1` when there is a hard
failure.

Initially, the setting has been solely used to enable the use of
`fsync()` when creating objects. Since then, the use has been extended
to also cover references and index files. As the option is not yet part
of any release, we can still correct this by renaming the option to
something more sensible, indicating not only correlation to objects.

This commit renames the option to `GIT_OPT_ENABLE_FSYNC_GITDIR`. We also
move the variable from the object to repository source code.