Untangle git_futils_mkdir from git_futils_mkdir_ext - the latter
assumes that we own everything beneath the base, as if it were
being called with a base of the repository or working directory,
and is tailored towards checkout and ensuring that there is no
bogosity beneath the base that must be cleaned up.

This is (at best) slow and (at worst) unsafe in the larger context
of a filesystem where we do not own things and cannot do things like
unlink symlinks that are in our way.

The previous commit left the comment referencing the earlier state of
the code, change it to explain the current logic. While here, change the
logic to avoid repeating the copy of the base pattern.

When a file on the workdir has the same or a newer timestamp than the
index, we need to perform a full check of the contents, as the update of
the file may have happened just after we wrote the index.

The iterator changes are such that we can reach inside the workdir
iterator from the diff, though it may be better to have an accessor
instead of moving these structs into the header.

Test to ensure that when status updates an index, it does not alter
the original mode for file types that are not supported (eg, symlinks
on Windows).

These tests want to test that we don't recalculate entries which match
the index already. This is however something we force when truncating
racily-clean entries.

Tick the index forward as we know that we don't perform the
modifications which the racily-clean code is trying to avoid.

Since a diff entry only concerns a single entry, zero the information
for the index side of a conflict.  (The index entry would otherwise
erroneously include the lowest-stage index entry - generally the
ancestor of a conflict.)

Test that during status, the index side of the conflict is empty.

When diffing against an index, return a new `GIT_DELTA_CONFLICTED`
delta type for items that are conflicted.  For a single file path,
only one delta will be produced (despite the fact that there are
multiple entries in the index).

Index iterators now have the (optional) ability to return conflicts
in the index.  Prior to this change, they would be omitted, and callers
(like diff) would omit conflicted index entries entirely.