The signature for the reflog is not something which changes
dynamically. Almost all uses will be NULL, since we want for the
repository's default identity to be used, making it noise.

In order to allow for changing the identity, we instead provide
git_repository_set_ident() and git_repository_ident() which allow a user
to override the choice of signature.

This describes their purpose better, as we now initialize ssl and some
other global stuff in there. Calling the init function is not something
which has been optional for a while now.

We cannot know from looking at .gitmodules whether a directory is a
submodule or not. We need the index or tree we are comparing against to
tell us. Otherwise we have to assume the entry in .gitmodules is stale
or otherwise invalid.

Thus we pass the index of the repository into the workdir iterator, even
if we do not want to compare against it. This follows what git does,
which even for `git diff <tree>`, it will consider staged submodules as
such.

When we free the global state at thread termination, we must also free
the error message in order not to leak the string once per thread.

Move the definition of git_thread_yield() to the test which needs it and
add the correct definition for it for FreeBSD and derivatives.

Original patch adding FreeBSD and derivatives by @jacquesg.

It seems that with the various recent changes to reference updating
and reflog writing, that the thread safety of refdb updates has
been reduced (either that or it was never thread safe and the
window for error has increased).  Either way, this test is now
sometimes segfaulting which is no good, so let's disable the test
for now.  We don't really make any public promises about thread
safety for this type of operation, so I think this is acceptable,
at least in the short term.