Add cache busting to attribute cache

This makes the git attributes and git ignores cache check
stat information before using the file contents from the
cache.  For cached files from the index, it checks the SHA
of the file instead.  This should reduce the need to ever
call `git_attr_cache_flush()` in most situations.

This commit also fixes the `git_status_should_ignore` API
to use the libgit2 standard parameter ordering.

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