commit-graph: Create `git_commit_graph` as an abstraction for the file

This change does a medium-size refactor of the git_commit_graph_file and
the interaction with the ODB. Now instead of the ODB owning a direct
reference to the git_commit_graph_file, there will be an intermediate
git_commit_graph. The main advantage of that is that now end users can
explicitly set a git_commit_graph that is eagerly checked for errors,
while still being able to lazily use the commit-graph in a regular ODB,
if the file is present.

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