diff_parse: correctly set options for parsed diffs

The function `diff_parsed_alloc` allocates and initializes a
`git_diff_parsed` structure. This structure also contains diff options.
While we initialize its flags, we fail to do a real initialization of
its values. This bites us when we want to actually use the generated
diff as we do not se the option's version field, which is required to
operate correctly.

Fix the issue by executing `git_diff_init_options` on the embedded
struct.

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