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author | Thouis (Ray) Jones <thouis@gmail.com> | 2012-05-25 09:59:43 +0200 |
---|---|---|
committer | Thouis (Ray) Jones <thouis@gmail.com> | 2012-06-15 13:55:40 +0200 |
commit | be294ab42bc51c7588e9ed50982046c03f00f618 (patch) | |
tree | cd60703c39ce6389acc6e80789ca8c6c8a1e0651 | |
parent | 6fe584f1d2775d96fa68ccb4707ba0f658e85376 (diff) | |
download | numpy-be294ab42bc51c7588e9ed50982046c03f00f618.tar.gz |
ENH: expose PyDataMem_NEW/FREE/RENEW as numpy API functions with an event hook.
Moves PyDataMem_NEW/FREE/RENEW to the external API.
Fixes PyDataMem_NEW/RENEW to return void* instead of char*.
Replaces PyDataMem_NEW/FREE with NpySortArray_malloc/free in sort.c.src
(should be reverted if npysort is moved to be part of multiarraymodule).
Adds PyDataMem_SetEventHook which takes a (PyDataMem_EventHookFunc *) as an argument,
with signature:
void hook(void *old, void *new, size_t size).
When not NULL, hook will be called at the end of each PyDataMem_NEW/FREE/RENEW:
result = PyDataMem_NEW(size) -> (*hook(NULL, result, size)
PyDataMem_FREE(ptr) -> (*hook(ptr, NULL, 0)
result = PyDataMem_RENEW(ptr, size) -> (*hook)(ptr, result, size)
Adds tests in multiarray_tests.c.src, driven by tests/test_multiarray.py.
-rw-r--r-- | numpy/core/code_generators/numpy_api.py | 4 | ||||
-rw-r--r-- | numpy/core/include/numpy/ndarraytypes.h | 11 | ||||
-rw-r--r-- | numpy/core/src/multiarray/multiarray_tests.c.src | 57 | ||||
-rw-r--r-- | numpy/core/src/multiarray/multiarraymodule.c | 64 | ||||
-rw-r--r-- | numpy/core/src/npysort/sort.c.src | 18 | ||||
-rw-r--r-- | numpy/core/tests/test_multiarray.py | 13 | ||||
-rw-r--r-- | numpy/lib/src/_compiled_base.c | 7 |
7 files changed, 161 insertions, 13 deletions
diff --git a/numpy/core/code_generators/numpy_api.py b/numpy/core/code_generators/numpy_api.py index 15b868e23..b4a5ff90c 100644 --- a/numpy/core/code_generators/numpy_api.py +++ b/numpy/core/code_generators/numpy_api.py @@ -346,6 +346,10 @@ multiarray_funcs_api = { 'PyArray_OutputAllowNAConverter': 306, 'PyArray_FailUnlessWriteable': 307, 'PyArray_SetUpdateIfCopyBase': 308, + 'PyDataMem_NEW': 309, + 'PyDataMem_FREE': 310, + 'PyDataMem_RENEW': 311, + 'PyDataMem_SetEventHook': 312, } ufunc_types_api = { diff --git a/numpy/core/include/numpy/ndarraytypes.h b/numpy/core/include/numpy/ndarraytypes.h index d77c5c90f..62780652a 100644 --- a/numpy/core/include/numpy/ndarraytypes.h +++ b/numpy/core/include/numpy/ndarraytypes.h @@ -362,10 +362,7 @@ NpyMaskValue_Create(npy_bool exposed, npy_uint8 payload) * allocated. */ - /* Data buffer */ -#define PyDataMem_NEW(size) ((char *)malloc(size)) -#define PyDataMem_FREE(ptr) free(ptr) -#define PyDataMem_RENEW(ptr,size) ((char *)realloc(ptr,size)) + /* Data buffer - PyDataMem_NEW/FREE/RENEW are in multiarraymodule.c */ #define NPY_USE_PYMEM 1 @@ -1976,6 +1973,12 @@ typedef struct { */ } PyArrayInterface; +/* + * This is a function for hooking into the PyDataMem_NEW/FREE/RENEW functions. + * See the documentation for PyDataMem_SetEventHook. + */ +typedef void (PyDataMem_EventHookFunc)(void *inp, void *outp, size_t size); + #if !(defined(NPY_NO_DEPRECATED_API) && (NPY_API_VERSION <= NPY_NO_DEPRECATED_API)) #include "npy_deprecated_api.h" #endif diff --git a/numpy/core/src/multiarray/multiarray_tests.c.src b/numpy/core/src/multiarray/multiarray_tests.c.src index 15d4c871e..09695b28f 100644 --- a/numpy/core/src/multiarray/multiarray_tests.c.src +++ b/numpy/core/src/multiarray/multiarray_tests.c.src @@ -375,6 +375,57 @@ clean_ax: return NULL; } +/* PyDataMem_SetHook tests */ +static int malloc_count, free_count; +static PyDataMem_EventHookFunc *old_hook = NULL; + +static void test_hook(void *old, void *new, size_t size) +{ + if (old == NULL) { + malloc_count++; + } + if (size == 0) { + free_count++; + } +} + +static PyObject* +test_pydatamem_seteventhook_start(PyObject* NPY_UNUSED(self), PyObject* NPY_UNUSED(args)) +{ + malloc_count = 0; + free_count = 0; + old_hook = PyDataMem_SetEventHook(test_hook); + Py_INCREF(Py_None); + return Py_None; +} + +static PyObject* +test_pydatamem_seteventhook_end(PyObject* NPY_UNUSED(self), PyObject* NPY_UNUSED(args)) +{ + static PyDataMem_EventHookFunc *my_hook; + + my_hook = PyDataMem_SetEventHook(old_hook); + if (my_hook != test_hook) { + PyErr_SetString(PyExc_ValueError, + "hook was not the expected test hook"); + return NULL; + } + + if (malloc_count == 0) { + PyErr_SetString(PyExc_ValueError, + "malloc count is zero after test"); + return NULL; + } + if (free_count == 0) { + PyErr_SetString(PyExc_ValueError, + "free count is zero after test"); + return NULL; + } + + Py_INCREF(Py_None); + return Py_None; +} + static PyMethodDef Multiarray_TestsMethods[] = { {"test_neighborhood_iterator", test_neighborhood_iterator, @@ -382,6 +433,12 @@ static PyMethodDef Multiarray_TestsMethods[] = { {"test_neighborhood_iterator_oob", test_neighborhood_iterator_oob, METH_VARARGS, NULL}, + {"test_pydatamem_seteventhook_start", + test_pydatamem_seteventhook_start, + METH_NOARGS, NULL}, + {"test_pydatamem_seteventhook_end", + test_pydatamem_seteventhook_end, + METH_NOARGS, NULL}, {NULL, NULL, 0, NULL} /* Sentinel */ }; diff --git a/numpy/core/src/multiarray/multiarraymodule.c b/numpy/core/src/multiarray/multiarraymodule.c index 7a657d8b9..e9401240a 100644 --- a/numpy/core/src/multiarray/multiarraymodule.c +++ b/numpy/core/src/multiarray/multiarraymodule.c @@ -3659,6 +3659,70 @@ test_interrupt(PyObject *NPY_UNUSED(self), PyObject *args) return PyInt_FromLong(a); } +/* malloc/free/realloc hook */ +NPY_NO_EXPORT PyDataMem_EventHookFunc *_PyDataMem_eventhook; + +/*NUMPY_API + * Sets the allocation event hook for numpy array data. + * Takes a PyDataMem_EventHookFunc *, which has the signature: + * void hook(void *old, void *new, size_t size). + * Returns a pointer to the previous hook or NULL. + * + * If not NULL, hook will be called at the end of each PyDataMem_NEW/FREE/RENEW: + * result = PyDataMem_NEW(size) -> (*hook)(NULL, result, size) + * PyDataMem_FREE(ptr) -> (*hook)(ptr, NULL, 0) + * result = PyDataMem_RENEW(ptr, size) -> (*hook)(ptr, result, size) + */ +NPY_NO_EXPORT PyDataMem_EventHookFunc * +PyDataMem_SetEventHook(PyDataMem_EventHookFunc *newhook) +{ + PyDataMem_EventHookFunc *temp = _PyDataMem_eventhook; + _PyDataMem_eventhook = newhook; + return temp; +} + +/*NUMPY_API + * Allocates memory for array data. + */ +NPY_NO_EXPORT void * +PyDataMem_NEW(size_t size) +{ + void *result; + + result = malloc(size); + if (_PyDataMem_eventhook != NULL) { + (*_PyDataMem_eventhook)(NULL, result, size); + } + return (char *)result; +} + +/*NUMPY_API + * Free memory for array data. + */ +NPY_NO_EXPORT void +PyDataMem_FREE(void *ptr) +{ + free(ptr); + if (_PyDataMem_eventhook != NULL) { + (*_PyDataMem_eventhook)(ptr, NULL, 0); + } +} + +/*NUMPY_API + * Reallocate/resize memory for array data. + */ +NPY_NO_EXPORT void * +PyDataMem_RENEW(void *ptr, size_t size) +{ + void *result; + + result = realloc(ptr, size); + if (_PyDataMem_eventhook != NULL) { + (*_PyDataMem_eventhook)(ptr, result, size); + } + return (char *)result; +} + static struct PyMethodDef array_module_methods[] = { {"_get_ndarray_c_version", (PyCFunction)array__get_ndarray_c_version, diff --git a/numpy/core/src/npysort/sort.c.src b/numpy/core/src/npysort/sort.c.src index 618259f96..514131748 100644 --- a/numpy/core/src/npysort/sort.c.src +++ b/numpy/core/src/npysort/sort.c.src @@ -38,6 +38,12 @@ #define SMALL_MERGESORT 20 #define SMALL_STRING 16 +/* These should be changed to PyDataMem_NEW/FREE if npysort is moved + * to the multiarray directory. + */ +#define NpySortArray_malloc(size) ((char *)malloc(size)) +#define NpySortArray_free(ptr) free(ptr) + /* ***************************************************************************** @@ -335,14 +341,14 @@ mergesort_@suff@(@type@ *start, npy_intp num, void *NOT_USED) pl = start; pr = pl + num; - pw = (@type@ *) PyDataMem_NEW((num/2)*sizeof(@type@)); + pw = (@type@ *) NpySortArray_malloc((num/2)*sizeof(@type@)); if (!pw) { PyErr_NoMemory(); return -1; } mergesort0_@suff@(pl, pr, pw); - PyDataMem_FREE(pw); + NpySortArray_free(pw); return 0; } @@ -476,13 +482,13 @@ mergesort_@suff@(@type@ *start, npy_intp num, PyArrayObject *arr) pl = start; pr = pl + num*len; - pw = (@type@ *) PyDataMem_NEW((num/2)*elsize); + pw = (@type@ *) NpySortArray_malloc((num/2)*elsize); if (!pw) { PyErr_NoMemory(); err = -1; goto fail_0; } - vp = (@type@ *) PyDataMem_NEW(elsize); + vp = (@type@ *) NpySortArray_malloc(elsize); if (!vp) { PyErr_NoMemory(); err = -1; @@ -490,9 +496,9 @@ mergesort_@suff@(@type@ *start, npy_intp num, PyArrayObject *arr) } mergesort0_@suff@(pl, pr, pw, vp, len); - PyDataMem_FREE(vp); + NpySortArray_free(vp); fail_1: - PyDataMem_FREE(pw); + NpySortArray_free(pw); fail_0: return err; } diff --git a/numpy/core/tests/test_multiarray.py b/numpy/core/tests/test_multiarray.py index e9c7a9c4f..9b975ea41 100644 --- a/numpy/core/tests/test_multiarray.py +++ b/numpy/core/tests/test_multiarray.py @@ -10,7 +10,8 @@ from numpy.testing.utils import WarningManager from numpy.compat import asbytes, getexception, strchar from test_print import in_foreign_locale from numpy.core.multiarray_tests import ( - test_neighborhood_iterator, test_neighborhood_iterator_oob + test_neighborhood_iterator, test_neighborhood_iterator_oob, + test_pydatamem_seteventhook_start, test_pydatamem_seteventhook_end, ) from numpy.testing import ( TestCase, run_module_suite, assert_, assert_raises, @@ -2633,6 +2634,16 @@ def test_flat_element_deletion(): except: raise AssertionError +class TestMemEventHook(TestCase): + def test_mem_seteventhook(self): + # The actual tests are within the C code in + # multiarray/multiarray_tests.c.src + test_pydatamem_seteventhook_start() + # force an allocation and free of a numpy array + a = np.zeros(10) + del a + test_pydatamem_seteventhook_end() + if __name__ == "__main__": run_module_suite() diff --git a/numpy/lib/src/_compiled_base.c b/numpy/lib/src/_compiled_base.c index c31ee5cd8..9bb8a613d 100644 --- a/numpy/lib/src/_compiled_base.c +++ b/numpy/lib/src/_compiled_base.c @@ -670,7 +670,10 @@ arr_interp(PyObject *NPY_UNUSED(self), PyObject *args, PyObject *kwdict) /* only pre-calculate slopes if there are relatively few of them. */ if (lenxp <= lenx) { - slopes = (double *) PyDataMem_NEW((lenxp - 1)*sizeof(double)); + slopes = (double *) PyArray_malloc((lenxp - 1)*sizeof(double)); + if (! slopes) { + goto fail; + } NPY_BEGIN_ALLOW_THREADS; for (i = 0; i < lenxp - 1; i++) { slopes[i] = (dy[i + 1] - dy[i])/(dx[i + 1] - dx[i]); @@ -692,7 +695,7 @@ arr_interp(PyObject *NPY_UNUSED(self), PyObject *args, PyObject *kwdict) } } NPY_END_ALLOW_THREADS; - PyDataMem_FREE(slopes); + PyArray_free(slopes); } else { NPY_BEGIN_ALLOW_THREADS; |