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authorEric Wieser <wieser.eric@gmail.com>2017-02-28 17:33:52 +0000
committerEric Wieser <wieser.eric@gmail.com>2018-05-25 22:55:59 -0700
commit7a3c50ab427cd9c4f3125a8e72d31f9141bd558a (patch)
treea1115f67bc353b3a3ef325c4f1e8c5db403c8d86
parent905e906d55fdcb8cc215de8aa287ea9654d1c95c (diff)
downloadnumpy-7a3c50ab427cd9c4f3125a8e72d31f9141bd558a.tar.gz
MAINT: rewrite np.ma.(median|sort) to use take_along_axis
-rw-r--r--numpy/ma/core.py10
-rw-r--r--numpy/ma/extras.py36
2 files changed, 13 insertions, 33 deletions
diff --git a/numpy/ma/core.py b/numpy/ma/core.py
index fb28fa8e5..b96620215 100644
--- a/numpy/ma/core.py
+++ b/numpy/ma/core.py
@@ -5531,15 +5531,7 @@ class MaskedArray(ndarray):
sidx = self.argsort(axis=axis, kind=kind, order=order,
fill_value=fill_value, endwith=endwith)
- # save memory for 1d arrays
- if self.ndim == 1:
- idx = sidx
- else:
- idx = list(np.ix_(*[np.arange(x) for x in self.shape]))
- idx[axis] = sidx
- idx = tuple(idx)
-
- self[...] = self[idx]
+ self[...] = np.take_along_axis(self, sidx, axis=axis)
def min(self, axis=None, out=None, fill_value=None, keepdims=np._NoValue):
"""
diff --git a/numpy/ma/extras.py b/numpy/ma/extras.py
index da35217d1..3be4d3625 100644
--- a/numpy/ma/extras.py
+++ b/numpy/ma/extras.py
@@ -747,19 +747,17 @@ def _median(a, axis=None, out=None, overwrite_input=False):
return np.ma.minimum_fill_value(asorted)
return s
- counts = count(asorted, axis=axis)
+ counts = count(asorted, axis=axis, keepdims=True)
h = counts // 2
- # create indexing mesh grid for all but reduced axis
- axes_grid = [np.arange(x) for i, x in enumerate(asorted.shape)
- if i != axis]
- ind = np.meshgrid(*axes_grid, sparse=True, indexing='ij')
+ # duplicate high if odd number of elements so mean does nothing
+ odd = counts % 2 == 1
+ l = np.where(odd, h, h-1)
- # insert indices of low and high median
- ind.insert(axis, h - 1)
- low = asorted[tuple(ind)]
- ind[axis] = np.minimum(h, asorted.shape[axis] - 1)
- high = asorted[tuple(ind)]
+ lh = np.concatenate([l,h], axis=axis)
+
+ # get low and high median
+ low_high = np.take_along_axis(asorted, lh, axis=axis)
def replace_masked(s):
# Replace masked entries with minimum_full_value unless it all values
@@ -767,30 +765,20 @@ def _median(a, axis=None, out=None, overwrite_input=False):
# larger than the fill value is undefined and a valid value placed
# elsewhere, e.g. [4, --, inf].
if np.ma.is_masked(s):
- rep = (~np.all(asorted.mask, axis=axis)) & s.mask
+ rep = (~np.all(asorted.mask, axis=axis, keepdims=True)) & s.mask
s.data[rep] = np.ma.minimum_fill_value(asorted)
s.mask[rep] = False
- replace_masked(low)
- replace_masked(high)
-
- # duplicate high if odd number of elements so mean does nothing
- odd = counts % 2 == 1
- np.copyto(low, high, where=odd)
- # not necessary for scalar True/False masks
- try:
- np.copyto(low.mask, high.mask, where=odd)
- except Exception:
- pass
+ replace_masked(low_high)
if np.issubdtype(asorted.dtype, np.inexact):
# avoid inf / x = masked
- s = np.ma.sum([low, high], axis=0, out=out)
+ s = np.ma.sum(low_high, axis=axis, out=out)
np.true_divide(s.data, 2., casting='unsafe', out=s.data)
s = np.lib.utils._median_nancheck(asorted, s, axis, out)
else:
- s = np.ma.mean([low, high], axis=0, out=out)
+ s = np.ma.mean(low_high, axis=axis, out=out)
return s