Merged revisions 6185-6187,6191-6221,6235-6238,6240-6241,6244,6250-6251,6253,6256,6258,6260-6261,6263,6265-6266,6268,6271,6283-6286,6291-6316,6320-6352,6354,6356,6358-6368,6370-6373,6398-6400,6410,6421-6424 via svnmerge from

http://svn.scipy.org/svn/numpy/trunk

................
  r6185 | cdavid | 2008-12-22 01:19:14 +0900 (Mon, 22 Dec 2008) | 1 line
  
  Add doc sources so that sdist tarball contains them.
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  r6186 | pierregm | 2008-12-22 19:01:51 +0900 (Mon, 22 Dec 2008) | 4 lines
  
  testutils:
  assert_array_compare : make sure that the comparison is performed on ndarrays, and make sure we use the np version of the comparison function.
  core:
  * Try not to touch the data in unary/binary ufuncs, (including inplace)
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  r6187 | pearu | 2008-12-22 19:05:00 +0900 (Mon, 22 Dec 2008) | 1 line
  
  Fix a bug.
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  r6191 | cdavid | 2008-12-23 13:10:59 +0900 (Tue, 23 Dec 2008) | 1 line
  
  Fix typos in the comments for manifest.
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  r6192 | cdavid | 2008-12-23 13:11:12 +0900 (Tue, 23 Dec 2008) | 1 line
  
  Use msvcrt values if available for manifest generation: only there starting from python 2.6.1.
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  r6193 | pearu | 2008-12-23 18:02:15 +0900 (Tue, 23 Dec 2008) | 1 line
  
  Fix issue 964: f2py python 2.6, 2.6.1 support.
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  r6194 | pierregm | 2008-12-24 08:43:43 +0900 (Wed, 24 Dec 2008) | 12 lines
  
  testutils:
  * assert_equal : use assert_equal_array on records
  * assert_array_compare : prevent the common mask to be back-propagated to the initial input arrays.
  * assert_equal_array : use operator.__eq__ instead of ma.equal
  * assert_equal_less: use operator.__less__ instead of ma.less
  
  core:
  * Fixed _check_fill_value for nested flexible types
  * Add a ndtype option to _make_mask_descr
  * Fixed mask_or for nested flexible types
  * Fixed the printing of masked arrays w/ flexible types.
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  r6195 | cdavid | 2008-12-26 21:16:45 +0900 (Fri, 26 Dec 2008) | 1 line
  
  Update to handle numscons 0.10.0 and above.
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  r6196 | cdavid | 2008-12-26 21:36:19 +0900 (Fri, 26 Dec 2008) | 1 line
  
  Do not import msvcrt globally in mingw32compiler module, since the module is imported on all platforms.
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  r6197 | cdavid | 2008-12-26 23:39:55 +0900 (Fri, 26 Dec 2008) | 1 line
  
  Do not test for functions already tested by python configure script.
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  r6198 | cdavid | 2008-12-27 14:56:58 +0900 (Sat, 27 Dec 2008) | 1 line
  
  BUG: Add a runtime check about endianness, to detect bug 4728 in python on Mac OS X.
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  r6199 | cdavid | 2008-12-27 19:06:25 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Fix some typo/syntax errors when converting dict access to a function in manifest generation.
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  r6200 | cdavid | 2008-12-27 19:15:30 +0900 (Sat, 27 Dec 2008) | 1 line
  
  BUG (#970): fix a python 2.6 bug in distutils which caused an unhelpful Error:None message when trying to build with no VS installed and without the -c mingw32 option.
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  r6201 | cdavid | 2008-12-27 19:30:49 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Improve the error message when initializing compiler failed.
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  r6202 | cdavid | 2008-12-27 19:32:05 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Try to initialize the msvc compiler before the general code to detect the error early.
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  r6203 | cdavid | 2008-12-27 19:43:41 +0900 (Sat, 27 Dec 2008) | 1 line
  
  BUG (#970): this commit should fix the actual bug, which albeeit linked to commir r6200, was caused in anoter code path.
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  r6204 | cdavid | 2008-12-27 19:57:05 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Fix manifest generation.
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  r6205 | cdavid | 2008-12-27 20:46:08 +0900 (Sat, 27 Dec 2008) | 1 line
  
  BUG (#827): close temp file before reopning them on windows, and make sure they are not automatically deleted on close either (2.6and higher specific).
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  r6206 | cdavid | 2008-12-27 21:18:47 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Do not define the union for runtime endianness detection if we don't check endianness.
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  r6207 | cdavid | 2008-12-27 22:48:52 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Start working on formatting failure on 2.6: copy how python does complex formatting.
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  r6208 | cdavid | 2008-12-27 23:44:11 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Fix formatting for purely imaginary complex numbers.
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  r6209 | cdavid | 2008-12-27 23:53:15 +0900 (Sat, 27 Dec 2008) | 1 line
  
  More work on formatting float.
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  r6210 | cdavid | 2008-12-27 23:59:41 +0900 (Sat, 27 Dec 2008) | 1 line
  
  Finish formatting fixes for float scalar arrays.
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  r6211 | cdavid | 2008-12-28 00:12:20 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Include umath_funcs_c99 in multiarray so that we can use isinf and co macros.
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  r6212 | cdavid | 2008-12-28 01:15:04 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Include config.h before our C99 math compat layer.
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  r6213 | cdavid | 2008-12-28 01:15:41 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Fix formatting.
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  r6214 | cdavid | 2008-12-28 01:16:18 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Do not define FMTR and FMTI macros, as those are already defined on some platforms.
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  r6215 | cdavid | 2008-12-28 01:16:52 +0900 (Sun, 28 Dec 2008) | 1 line
  
  More formatting fixes.
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  r6216 | cdavid | 2008-12-28 01:17:27 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Remove undef of removed macro.
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  r6217 | cdavid | 2008-12-28 01:33:40 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Do not use PyOS_ascii_formatd, as it does not handle long double correctly.
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  r6218 | cdavid | 2008-12-28 02:19:40 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Try ugly hack to circumvent long double brokenness with mingw.
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  r6219 | cdavid | 2008-12-28 02:25:50 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Use ugly hack for mingw long double pb with complex format function as well.
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  r6220 | cdavid | 2008-12-28 12:18:20 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Revert formatting changes: ascii_formatd only works for double, so we can't use it as it is for our formatting needs.
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  r6221 | cdavid | 2008-12-28 15:44:06 +0900 (Sun, 28 Dec 2008) | 1 line
  
  Do not add doc sources through add_data_dir: it will put the docs alongside numpy, as a separate package, which is not what we want. Use the manifest instead, since that's the only way I know of to include something in sdist-generated tarballs.
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  r6235 | cdavid | 2008-12-29 16:57:52 +0900 (Mon, 29 Dec 2008) | 13 lines
  
  Merged revisions 6233-6234 via svnmerge from 
  http://svn.scipy.org/svn/numpy/branches/fix_float_format
  
  ........
    r6233 | cdavid | 2008-12-29 12:49:09 +0900 (Mon, 29 Dec 2008) | 1 line
    
    Use parametric tests for format tests so that it is clearer which type is failing.
  ........
    r6234 | cdavid | 2008-12-29 12:49:27 +0900 (Mon, 29 Dec 2008) | 1 line
    
    Fix formatting tests: cfloat and cdouble as well as np.float and np.double are the same; make sure we test 4 bytes float.
  ........
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  r6236 | cdavid | 2008-12-29 17:02:15 +0900 (Mon, 29 Dec 2008) | 1 line
  
  Add nan/inf tests for formatting.
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  r6237 | cdavid | 2008-12-29 17:26:04 +0900 (Mon, 29 Dec 2008) | 1 line
  
  Add test for real float types locale independance.
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  r6238 | cdavid | 2008-12-29 17:35:06 +0900 (Mon, 29 Dec 2008) | 1 line
  
  Clearer error messages for formatting failures.
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  r6240 | cdavid | 2008-12-30 12:48:11 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Add tests for print of float types.
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  r6241 | cdavid | 2008-12-30 12:56:54 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Add print tests for complex types.
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  r6244 | cdavid | 2008-12-30 13:20:48 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix test for print: forgot to make sure the value is a float before comparing it.
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  r6250 | cdavid | 2008-12-30 14:02:28 +0900 (Tue, 30 Dec 2008) | 17 lines
  
  Merged revisions 6247-6249 via svnmerge from 
  http://svn.scipy.org/svn/numpy/branches/fix_float_format
  
  ........
    r6247 | cdavid | 2008-12-30 13:41:37 +0900 (Tue, 30 Dec 2008) | 1 line
    
    Handle 1e10 specially, as it is the limit where exp notation is shorter than decimal for single precision, but not for double (python native one).
  ........
    r6248 | cdavid | 2008-12-30 13:47:38 +0900 (Tue, 30 Dec 2008) | 1 line
    
    Refactor a bit redirected output print test.
  ........
    r6249 | cdavid | 2008-12-30 13:49:31 +0900 (Tue, 30 Dec 2008) | 1 line
    
    Fix test for single precision print.
  ........
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  r6251 | cdavid | 2008-12-30 14:12:50 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Use np.inf instead of float('inf'), as the later does not work on windows for python < 2.6.
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  r6253 | cdavid | 2008-12-30 14:15:09 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix typo in test.
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  r6256 | cdavid | 2008-12-30 14:34:22 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Special case float tests on windows: python 2.5 and below have >=3 digits in the exp.
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  r6258 | cdavid | 2008-12-30 14:42:03 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Hardcode reference for inf/nan-involved values.
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  r6260 | cdavid | 2008-12-30 14:50:18 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix more formatting tests on win32.
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  r6261 | cdavid | 2008-12-30 14:52:16 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix some more redirected output print tests.
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  r6263 | cdavid | 2008-12-30 15:01:31 +0900 (Tue, 30 Dec 2008) | 1 line
  
  More fixes for print tests.
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  r6265 | cdavid | 2008-12-30 15:03:56 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix typo.
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  r6266 | cdavid | 2008-12-30 15:08:06 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Fix typo.
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  r6268 | cdavid | 2008-12-30 15:12:26 +0900 (Tue, 30 Dec 2008) | 1 line
  
  complex scalar arrays cannot be created from real/imag args: wrap init values in a complex.
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  r6271 | cdavid | 2008-12-30 15:32:03 +0900 (Tue, 30 Dec 2008) | 1 line
  
  Do not use dict for reference: hashing on scalar arrays does not work as I expected.
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  r6283 | ptvirtan | 2008-12-31 10:14:47 +0900 (Wed, 31 Dec 2008) | 1 line
  
  Fix #951: make tests to clean temp files properly
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  r6284 | jarrod.millman | 2009-01-01 08:25:03 +0900 (Thu, 01 Jan 2009) | 2 lines
  
  ran reindent
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  r6285 | alan.mcintyre | 2009-01-01 08:46:34 +0900 (Thu, 01 Jan 2009) | 15 lines
  
  Remove the following deprecated items from numpy.testing:
  
  - ParametricTestCase 
  - The following arguments from numpy.testing.Tester.test(): level, 
  verbosity, 
    all, sys_argv, testcase_pattern
  - Path manipulation functions: set_package_path, set_local_path, 
  restore_path
  - NumpyTestCase, NumpyTest
  
  Also separated testing parameter setup from NoseTester.test into 
  NoseTester.prepare_test_args for use in a utility script for valgrind 
  testing (see NumPy ticket #784).
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  r6286 | jarrod.millman | 2009-01-01 16:56:53 +0900 (Thu, 01 Jan 2009) | 2 lines
  
  add default include dir for Fedora/Red Hat (see SciPy ticket 817)
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  r6291 | cdavid | 2009-01-04 19:57:39 +0900 (Sun, 04 Jan 2009) | 1 line
  
  Do not import md5 on python >= 2.6; use hashlib instead.
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  r6292 | cdavid | 2009-01-04 20:08:16 +0900 (Sun, 04 Jan 2009) | 1 line
  
  Do not use popen* but subprocess.Popen instead.
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  r6293 | cdavid | 2009-01-04 21:03:29 +0900 (Sun, 04 Jan 2009) | 1 line
  
  Revert md5 change: hashlib.md5 is not a drop-in replacement for md5.
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  r6294 | pierregm | 2009-01-05 05:16:00 +0900 (Mon, 05 Jan 2009) | 2 lines
  
  * adapted default_fill_value for flexible datatype
  * fixed max/minimum_fill_value for flexible datatype
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  r6295 | stefan | 2009-01-06 06:51:18 +0900 (Tue, 06 Jan 2009) | 1 line
  
  Credit more developers.
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  r6296 | pierregm | 2009-01-06 07:52:21 +0900 (Tue, 06 Jan 2009) | 1 line
  
  *moved the printing templates out of MaskedArray.__repr__
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  r6297 | stefan | 2009-01-06 19:09:00 +0900 (Tue, 06 Jan 2009) | 1 line
  
  Use new-style classes with multiple-inheritance to address bug in IronPython.
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  r6298 | pierregm | 2009-01-07 05:35:37 +0900 (Wed, 07 Jan 2009) | 1 line
  
  * Bugfix #961
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  r6299 | pierregm | 2009-01-08 03:14:12 +0900 (Thu, 08 Jan 2009) | 1 line
  
  * Fixed iadd/isub/imul when the base array has no mask but the other array does
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  r6300 | pierregm | 2009-01-08 07:34:51 +0900 (Thu, 08 Jan 2009) | 3 lines
  
  * Renamed `torecords` to `toflex`, keeping `torecords` as an alias
  * Introduced `fromflex`, to reconstruct a masked_array from the output of `toflex` (can?\226?\128?\153t `use fromrecords` as it would clash with `numpy.ma.mrecords.fromrecords`)
  * Fixed a bug in MaskedBinaryOperation (#979) (wrong array broadcasting)
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  r6301 | cdavid | 2009-01-08 18:19:00 +0900 (Thu, 08 Jan 2009) | 1 line
  
  Avoid putting things into stderr when errors occurs in f2py wrappers; put all the info in the python error string instead.
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  r6302 | cdavid | 2009-01-09 00:11:32 +0900 (Fri, 09 Jan 2009) | 1 line
  
  Fix python 2.4 issue.
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  r6303 | chanley | 2009-01-09 01:30:01 +0900 (Fri, 09 Jan 2009) | 1 line
  
  Fix test_print.py function _test_locale_independance() since str(1.2) does not use the LC_NUMERIC locale to convert numbers.  Fix from Mark Sienkiewicz.
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  r6304 | cdavid | 2009-01-09 04:22:21 +0900 (Fri, 09 Jan 2009) | 1 line
  
  Revert buggy test fix for locale independecce.
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  r6305 | pierregm | 2009-01-09 05:02:29 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  * Add __eq__ and __ne__ for support of flexible arrays.
  * Fixed .filled for nested structures
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  r6306 | pierregm | 2009-01-09 06:51:04 +0900 (Fri, 09 Jan 2009) | 1 line
  
  * Remove a debugging print statement.
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  r6307 | jarrod.millman | 2009-01-09 11:14:35 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  Updated license file
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  r6308 | cdavid | 2009-01-09 14:26:58 +0900 (Fri, 09 Jan 2009) | 1 line
  
  Tag formatting unit tests as known failures.
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  r6309 | jarrod.millman | 2009-01-09 17:59:29 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  should be more reliable way to determine what bit platform
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  r6310 | jarrod.millman | 2009-01-09 18:14:17 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  better default library paths for 64bit arch
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  r6311 | jarrod.millman | 2009-01-09 18:57:15 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  simplification suggested by stefan
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  r6312 | jarrod.millman | 2009-01-09 19:02:09 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  switch the order [lib,lib64] --> [lib64,lib] 
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  r6313 | jarrod.millman | 2009-01-09 19:18:29 +0900 (Fri, 09 Jan 2009) | 2 lines
  
  removed unneeded import
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  r6314 | jarrod.millman | 2009-01-10 04:37:16 +0900 (Sat, 10 Jan 2009) | 2 lines
  
  can't use append an int to a string
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  r6315 | pierregm | 2009-01-10 05:18:12 +0900 (Sat, 10 Jan 2009) | 2 lines
  
  * Added flatten_structured_arrays
  * Fixed _get_recordarray for nested structures
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  r6316 | pierregm | 2009-01-10 10:53:05 +0900 (Sat, 10 Jan 2009) | 1 line
  
  * Add flatten_structured_array to the namespace
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  r6320 | pierregm | 2009-01-14 06:01:58 +0900 (Wed, 14 Jan 2009) | 9 lines
  
  numpy.ma.core:
  * introduced baseclass, sharedmask and hardmask as readonly properties of MaskedArray
  * docstrings update
  
  numpy.ma.extras:
  * docstring updates
  
  docs/reference
  * introduced maskedarray, maskedarray.baseclass, maskedarray.generic
................
  r6321 | stefan | 2009-01-14 16:14:27 +0900 (Wed, 14 Jan 2009) | 2 lines
  
  Docstring: remove old floating point arithmetic, parallel
  execution and postponed import references.
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  r6322 | stefan | 2009-01-14 16:55:16 +0900 (Wed, 14 Jan 2009) | 1 line
  
  Fix printing of limits.
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  r6323 | stefan | 2009-01-14 16:56:10 +0900 (Wed, 14 Jan 2009) | 1 line
  
  Fix finfo to work on all instances, not just NumPy scalars.
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  r6324 | pierregm | 2009-01-17 09:15:15 +0900 (Sat, 17 Jan 2009) | 1 line
  
  * fixed _arraymethod.__call__ for structured arrays
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  r6325 | ptvirtan | 2009-01-18 06:24:13 +0900 (Sun, 18 Jan 2009) | 3 lines
  
  Make `trapz` accept 1-D `x` parameter for n-d `y`, even if axis != -1.
  
  Additional tests included.
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  r6326 | pierregm | 2009-01-19 17:53:53 +0900 (Mon, 19 Jan 2009) | 3 lines
  
  * renamed FlatIter to MaskedIterator
  * added __getitem__ to MaskedIterator
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  r6327 | pierregm | 2009-01-19 18:01:24 +0900 (Mon, 19 Jan 2009) | 2 lines
  
  * replace np.asarray by np.asanyarray in unique1d
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  r6328 | pierregm | 2009-01-19 18:04:20 +0900 (Mon, 19 Jan 2009) | 2 lines
  
  * add intersect1d, intersect1d_nu, setdiff1d, setmember1d, setxor1d, unique1d, union1d
  * use np.atleast1d instead of ma.atleast1d
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  r6329 | pierregm | 2009-01-20 06:22:52 +0900 (Tue, 20 Jan 2009) | 3 lines
  
  * lib     : introduced _iotools
  * lib.io : introduced genfromtxt, ndfromtxt, mafromtxt, recfromtxt, recfromcsv.
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  r6330 | pierregm | 2009-01-22 14:37:36 +0900 (Thu, 22 Jan 2009) | 1 line
  
  * genfromtxt : if names is True, accept a line starting with a comment character as header.
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  r6331 | pierregm | 2009-01-22 14:40:25 +0900 (Thu, 22 Jan 2009) | 1 line
  
  * added recfunctions, a collection of utilities to manipulate structured arrays.
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  r6332 | pierregm | 2009-01-23 03:21:32 +0900 (Fri, 23 Jan 2009) | 2 lines
  
  * fixed a machine-dependent issue on default int ('<i4' on OS X, '<i8' on linux) ?
  * fixed an machine-dependent issue on argsort ?
................
  r6333 | cdavid | 2009-01-24 17:02:14 +0900 (Sat, 24 Jan 2009) | 1 line
  
  Fix compilation error on 2.4.
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  r6334 | pierregm | 2009-01-27 06:04:26 +0900 (Tue, 27 Jan 2009) | 7 lines
  
  * _iotools.StringConverter :
      - add a _checked attribute to indicate whether the converter has been upgraded or not.
      - switched the default value for bool to False
  * io.genfromtxt:
      - fixed for the case where a whole column is masked: switch to bool or the common dtype (if needed)
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  r6335 | pierregm | 2009-01-27 11:46:26 +0900 (Tue, 27 Jan 2009) | 1 line
  
  * prevent MaskedBinaryOperation and DomainedBinaryOperation to shrink the mask of the output when at least one of the inputs has a mask full of False
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  r6336 | matthew.brett@gmail.com | 2009-01-30 09:26:44 +0900 (Fri, 30 Jan 2009) | 1 line
  
  New docstrings for byteorder and newbyteorder()
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  r6337 | pierregm | 2009-02-02 14:20:17 +0900 (Mon, 02 Feb 2009) | 2 lines
  
  * Added a 'autoconvert' option to stack_arrays.
  * Fixed 'stack_arrays' to work with fields with titles.
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  r6338 | pierregm | 2009-02-04 02:11:44 +0900 (Wed, 04 Feb 2009) | 1 line
  
  * Make sure that StringConverter.update sets the type to object if it can't define it.
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  r6339 | pierregm | 2009-02-05 05:52:36 +0900 (Thu, 05 Feb 2009) | 2 lines
  
  * test__iotools : prevent test_upgrademapper if dateutil is not installed
  * MaskedArray.__rmul__ : switch to multiply(self, other)
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  r6340 | pierregm | 2009-02-05 06:53:05 +0900 (Thu, 05 Feb 2009) | 1 line
  
  test_upgrademapper : got rid of the dateutil import
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  r6341 | pierregm | 2009-02-05 13:31:51 +0900 (Thu, 05 Feb 2009) | 2 lines
  
  *  genfromtxt : Fixed when a dtype involving objects is explicitly given. Raise a NotImplementedError if the dtype is nested.
  * _iotools : make sure StringConverter gets properly initiated when a function returning a np.object is used as input parameter.
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  r6342 | alan.mcintyre | 2009-02-06 05:11:40 +0900 (Fri, 06 Feb 2009) | 6 lines
  
  Issue #957:
  - Fix problems with test decorators when used on test generators.  
  - The skip/fail arguments for skipif and knownfailureif can now be 
    either a bool or a callable that returns a bool.
  - Added tests for the test decorators. 
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  r6343 | ptvirtan | 2009-02-06 09:27:08 +0900 (Fri, 06 Feb 2009) | 1 line
  
  doc/numpydoc: work better together with Sphinx's  config option
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  r6344 | ptvirtan | 2009-02-06 09:51:41 +0900 (Fri, 06 Feb 2009) | 1 line
  
  doc: Move maskedarray docs upward in TOC
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  r6345 | oliphant | 2009-02-06 15:25:50 +0900 (Fri, 06 Feb 2009) | 1 line
  
  Avoid re-creating the sequence when there is only one field in the regular expression.
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  r6346 | oliphant | 2009-02-06 15:31:11 +0900 (Fri, 06 Feb 2009) | 1 line
  
  Removed an unneccessary return statement in a unit test.
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  r6347 | pearu | 2009-02-06 23:36:58 +0900 (Fri, 06 Feb 2009) | 1 line
  
  Fix a bug: python system_info.py failed because _pkg_config_info defined section to be None.
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  r6348 | pearu | 2009-02-06 23:38:57 +0900 (Fri, 06 Feb 2009) | 1 line
  
  Fix another bug, see last commit.
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  r6349 | pierregm | 2009-02-07 18:19:12 +0900 (Sat, 07 Feb 2009) | 2 lines
  
  MaskedArray.resize : systematically raise a TypeError exception, as a masked array never owns its data
  MaskedIterator : fixed to allow .flat on masked matrices
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  r6350 | pierregm | 2009-02-08 03:51:31 +0900 (Sun, 08 Feb 2009) | 1 line
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  r6351 | ptvirtan | 2009-02-10 05:18:08 +0900 (Tue, 10 Feb 2009) | 1 line
  
  Fix #955: fix errobj leak in scalarmath floating point error handling
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  r6352 | pierregm | 2009-02-10 09:42:40 +0900 (Tue, 10 Feb 2009) | 1 line
  
  * prevent modifications to the mask to be back-propagated w/ __array_wrap__
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  r6354 | cdavid | 2009-02-10 19:44:01 +0900 (Tue, 10 Feb 2009) | 1 line
  
  Fix hyphen (patch from debian package).
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  r6356 | pierregm | 2009-02-11 10:51:28 +0900 (Wed, 11 Feb 2009) | 1 line
  
  * MaskedArray.__array_wrap__ : forces the domain (if any) to a ndarray (fill with True)
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  r6358 | oliphant | 2009-02-12 13:22:03 +0900 (Thu, 12 Feb 2009) | 1 line
  
  Add multiple-field access by making a copy of the array and filling with the selected fields.
................
  r6359 | stefan | 2009-02-12 14:44:07 +0900 (Thu, 12 Feb 2009) | 2 lines
  
  Trust user's specification of MACOSX_DEPLOYMENT_TARGET [patch by Brian
  Granger].
................
  r6360 | cdavid | 2009-02-14 23:54:26 +0900 (Sat, 14 Feb 2009) | 1 line
  
  Merge fix_float_format branch into the trunk.
................
  r6361 | cdavid | 2009-02-15 00:02:39 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Fix typo in multiarray tests.
................
  r6362 | cdavid | 2009-02-15 00:03:22 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Remove leftover in TestIO.
................
  r6363 | cdavid | 2009-02-15 02:03:51 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Include C99 math compatbility layer in multiarray - isnan and co needed by numpyos.c
................
  r6364 | ptvirtan | 2009-02-15 07:09:26 +0900 (Sun, 15 Feb 2009) | 1 line
  
  More add_newdocs entries, and make add_newdoc capable of adding docs also to normal Python objects.
................
  r6365 | ptvirtan | 2009-02-15 07:10:24 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Move (un)packbits docstrings to add_newdocs.py. Fix typos.
................
  r6366 | ptvirtan | 2009-02-15 07:11:19 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Document constants in numpy.doc.constants
................
  r6367 | ptvirtan | 2009-02-15 07:38:32 +0900 (Sun, 15 Feb 2009) | 1 line
  
  Move numpy.lib __doc__ back to info.py; was moved to __init__.py by mistake.
................
  r6368 | pierregm | 2009-02-15 07:42:29 +0900 (Sun, 15 Feb 2009) | 1 line
  
  * genfromtxt : fixed case when using explicit converters and explicit dtype.
................
  r6370 | ptvirtan | 2009-02-16 00:44:47 +0900 (Mon, 16 Feb 2009) | 1 line
  
  sphinxext: clean up plot directive, and merge some features from matplotlib
................
  r6371 | charris | 2009-02-18 06:19:10 +0900 (Wed, 18 Feb 2009) | 2 lines
  
  Coding style cleanups.
................
  r6372 | cdavid | 2009-02-18 14:06:57 +0900 (Wed, 18 Feb 2009) | 1 line
  
  Fix some const issues in NumPyOs_ascii_strtod.
................
  r6373 | charris | 2009-02-18 14:36:35 +0900 (Wed, 18 Feb 2009) | 1 line
  
  Coding style cleanups.
................
  r6398 | charris | 2009-02-19 05:54:52 +0900 (Thu, 19 Feb 2009) | 2 lines
  
  Coding style cleanups.
................
  r6399 | charris | 2009-02-19 09:45:14 +0900 (Thu, 19 Feb 2009) | 2 lines
  
  Coding style cleanups.
................
  r6400 | charris | 2009-02-19 13:58:23 +0900 (Thu, 19 Feb 2009) | 1 line
  
  Coding style cleanups.
................
  r6410 | cdavid | 2009-02-19 19:05:28 +0900 (Thu, 19 Feb 2009) | 1 line
  
  Tag known failure on win32.
................
  r6421 | stefan | 2009-02-20 04:28:08 +0900 (Fri, 20 Feb 2009) | 1 line
  
  Fix tests using strptime to be Python 2.4 compatible.
................
  r6422 | charris | 2009-02-20 08:25:01 +0900 (Fri, 20 Feb 2009) | 2 lines
  
  Coding style cleanups.
................
  r6423 | charris | 2009-02-20 12:40:53 +0900 (Fri, 20 Feb 2009) | 1 line
  
  Coding style cleanups.
................
  r6424 | cdavid | 2009-02-20 22:30:20 +0900 (Fri, 20 Feb 2009) | 1 line
  
  Unhelpful message for compaq fortran compiler.
................

1 files changed, 40 insertions, 66 deletions

diff --git a/numpy/testing/nosetester.py b/numpy/testing/nosetester.py
index bd4c78308..7a10a5b1f 100644
--- a/numpy/testing/nosetester.py
+++ b/numpy/testing/nosetester.py
@@ -5,7 +5,6 @@ Implements test and bench functions for modules.
 '''
 import os
 import sys
-import warnings
 
 def get_package_name(filepath):
     # find the package name given a path name that's part of the package
@@ -28,7 +27,6 @@ def get_package_name(filepath):
     pkg_name.reverse()
     return '.'.join(pkg_name)
 
-
 def import_nose():
     """ Import nose only when needed.
     """
@@ -166,8 +164,8 @@ class NoseTester(object):
         print "nose version %d.%d.%d" % nose.__versioninfo__
 
 
-    def test(self, label='fast', verbose=1, extra_argv=None, doctests=False,
-             coverage=False, **kwargs):
+    def prepare_test_args(self, label='fast', verbose=1, extra_argv=None, 
+                          doctests=False, coverage=False):
         ''' Run tests for module using nose
 
         %(test_header)s
@@ -179,39 +177,6 @@ class NoseTester(object):
              http://nedbatchelder.com/code/modules/coverage.html)
         '''
 
-        old_args = set(['level', 'verbosity', 'all', 'sys_argv',
-                        'testcase_pattern'])
-        unexpected_args = set(kwargs.keys()) - old_args
-        if len(unexpected_args) > 0:
-            ua = ', '.join(unexpected_args)
-            raise TypeError("test() got unexpected arguments: %s" % ua)
-
-        # issue a deprecation warning if any of the pre-1.2 arguments to
-        # test are given
-        if old_args.intersection(kwargs.keys()):
-            warnings.warn("This method's signature will change in the next " \
-                          "release; the level, verbosity, all, sys_argv, " \
-                          "and testcase_pattern keyword arguments will be " \
-                          "removed. Please update your code.",
-                          DeprecationWarning, stacklevel=2)
-
-        # Use old arguments if given (where it makes sense)
-        # For the moment, level and sys_argv are ignored
-
-        # replace verbose with verbosity
-        if kwargs.get('verbosity') is not None:
-            verbose = kwargs.get('verbosity')
-            # cap verbosity at 3 because nose becomes *very* verbose beyond that
-            verbose = min(verbose, 3)
-
-        import utils
-        utils.verbose = verbose
-
-        # if all evaluates as True, omit attribute filter and run doctests
-        if kwargs.get('all'):
-            label = ''
-            doctests = True
-
         # if doctests is in the extra args, remove it and set the doctest
         # flag so the NumPy doctester is used instead
         if extra_argv and '--with-doctest' in extra_argv:
@@ -221,9 +186,6 @@ class NoseTester(object):
         argv = self._test_argv(label, verbose, extra_argv)
         if doctests:
             argv += ['--with-numpydoctest']
-            print "Running unit tests and doctests for %s" % self.package_name
-        else:
-            print "Running unit tests for %s" % self.package_name
 
         if coverage:
             argv+=['--cover-package=%s' % self.package_name, '--with-coverage',
@@ -237,33 +199,8 @@ class NoseTester(object):
         argv += ['--exclude','swig_ext']
         argv += ['--exclude','array_from_pyobj']
 
-        self._show_system_info()
-
         nose = import_nose()
 
-        # Because nose currently discards the test result object, but we need
-        # to return it to the user, override TestProgram.runTests to retain
-        # the result
-        class NumpyTestProgram(nose.core.TestProgram):
-            def runTests(self):
-                """Run Tests. Returns true on success, false on failure, and
-                sets self.success to the same value.
-                """
-                if self.testRunner is None:
-                    self.testRunner = nose.core.TextTestRunner(stream=self.config.stream,
-                                                               verbosity=self.config.verbosity,
-                                                               config=self.config)
-                plug_runner = self.config.plugins.prepareTestRunner(self.testRunner)
-                if plug_runner is not None:
-                    self.testRunner = plug_runner
-                self.result = self.testRunner.run(self.test)
-                self.success = self.result.wasSuccessful()
-                return self.success
-
-        # reset doctest state on every run
-        import doctest
-        doctest.master = None
-
         # construct list of plugins, omitting the existing doctest plugin
         import nose.plugins.builtin
         from noseclasses import NumpyDoctest, KnownFailure
@@ -271,10 +208,46 @@ class NoseTester(object):
         for p in nose.plugins.builtin.plugins:
             plug = p()
             if plug.name == 'doctest':
+                # skip the builtin doctest plugin
                 continue
 
             plugins.append(plug)
 
+        return argv, plugins
+
+    def test(self, label='fast', verbose=1, extra_argv=None, doctests=False,
+             coverage=False):
+        ''' Run tests for module using nose
+
+        %(test_header)s
+        doctests : boolean
+            If True, run doctests in module, default False
+        coverage : boolean
+            If True, report coverage of NumPy code, default False
+            (Requires the coverage module:
+             http://nedbatchelder.com/code/modules/coverage.html)
+        '''
+
+        # cap verbosity at 3 because nose becomes *very* verbose beyond that
+        verbose = min(verbose, 3)
+
+        import utils
+        utils.verbose = verbose
+
+        if doctests:
+            print "Running unit tests and doctests for %s" % self.package_name
+        else:
+            print "Running unit tests for %s" % self.package_name
+
+        self._show_system_info()
+
+        # reset doctest state on every run
+        import doctest
+        doctest.master = None
+
+        argv, plugins = self.prepare_test_args(label, verbose, extra_argv,
+                                               doctests, coverage)
+        from noseclasses import NumpyTestProgram
         t = NumpyTestProgram(argv=argv, exit=False, plugins=plugins)
         return t.result
 
@@ -286,9 +259,10 @@ class NoseTester(object):
         print "Running benchmarks for %s" % self.package_name
         self._show_system_info()
 
-        nose = import_nose()
         argv = self._test_argv(label, verbose, extra_argv)
         argv += ['--match', r'(?:^|[\\b_\\.%s-])[Bb]ench' % os.sep]
+
+        nose = import_nose()
         return nose.run(argv=argv)
 
     # generate method docstrings