diff options
Diffstat (limited to 'numpy')
| -rw-r--r-- | numpy/core/code_generators/numpy_api.py | 1 | ||||
| -rw-r--r-- | numpy/core/src/multiarray/convert.c | 101 | ||||
| -rw-r--r-- | numpy/core/src/multiarray/einsum.c.src | 667 | ||||
| -rw-r--r-- | numpy/core/src/multiarray/new_iterator.c.src | 27 | ||||
| -rw-r--r-- | numpy/core/tests/test_numeric.py | 1 |
5 files changed, 632 insertions, 165 deletions
diff --git a/numpy/core/code_generators/numpy_api.py b/numpy/core/code_generators/numpy_api.py index 75f89945a..b943f17de 100644 --- a/numpy/core/code_generators/numpy_api.py +++ b/numpy/core/code_generators/numpy_api.py @@ -301,6 +301,7 @@ multiarray_funcs_api = { 'PyArray_CanCastArrayTo': 266, 'PyArray_CanCastTypeTo': 267, 'PyArray_EinsteinSum': 268, + 'PyArray_FillWithZero': 269, } ufunc_types_api = { diff --git a/numpy/core/src/multiarray/convert.c b/numpy/core/src/multiarray/convert.c index a2c965181..5aef72d45 100644 --- a/numpy/core/src/multiarray/convert.c +++ b/numpy/core/src/multiarray/convert.c @@ -13,6 +13,7 @@ #include "arrayobject.h" #include "mapping.h" +#include "lowlevel_strided_loops.h" #include "convert.h" @@ -329,8 +330,104 @@ PyArray_FillWithScalar(PyArrayObject *arr, PyObject *obj) } /*NUMPY_API - Copy an array. -*/ + * Fills an array with zeros. + * + * Returns 0 on success, -1 on failure. + */ +NPY_NO_EXPORT int +PyArray_FillWithZero(PyArrayObject *a) +{ + PyArray_StridedTransferFn *stransfer = NULL; + void *transferdata = NULL; + PyArray_Descr *dtype = PyArray_DESCR(a); + NpyIter *iter; + + NpyIter_IterNext_Fn iternext; + char **dataptr; + npy_intp stride, *countptr; + int needs_api; + + NPY_BEGIN_THREADS_DEF; + + if (!PyArray_ISWRITEABLE(a)) { + PyErr_SetString(PyExc_RuntimeError, "cannot write to array"); + return -1; + } + + /* A zero-sized array needs no zeroing */ + if (PyArray_SIZE(a) == 0) { + return 0; + } + + /* If it's possible to do a simple memset, do so */ + if (!PyDataType_REFCHK(dtype) && (PyArray_ISCONTIGUOUS(a) || + PyArray_ISFORTRAN(a))) { + memset(PyArray_DATA(a), 0, PyArray_NBYTES(a)); + return 0; + } + + /* Use an iterator to go through all the data */ + iter = NpyIter_New(a, NPY_ITER_WRITEONLY|NPY_ITER_NO_INNER_ITERATION, + NPY_KEEPORDER, NPY_NO_CASTING, + NULL, 0, NULL, 0); + + if (iter == NULL) { + return -1; + } + + iternext = NpyIter_GetIterNext(iter, NULL); + if (iternext == NULL) { + NpyIter_Deallocate(iter); + return -1; + } + dataptr = NpyIter_GetDataPtrArray(iter); + stride = NpyIter_GetInnerStrideArray(iter)[0]; + countptr = NpyIter_GetInnerLoopSizePtr(iter); + + needs_api = NpyIter_IterationNeedsAPI(iter); + + /* + * Because buffering is disabled in the iterator, the inner loop + * strides will be the same throughout the iteration loop. Thus, + * we can pass them to this function to take advantage of + * contiguous strides, etc. + * + * By setting the src_dtype to NULL, we get a function which sets + * the destination to zeros. + */ + if (PyArray_GetDTypeTransferFunction( + PyArray_ISALIGNED(a), + 0, stride, + NULL, PyArray_DESCR(a), + 0, + &stransfer, &transferdata, + &needs_api) != NPY_SUCCEED) { + NpyIter_Deallocate(iter); + return -1; + } + + if (!needs_api) { + NPY_BEGIN_THREADS; + } + + do { + stransfer(NULL, 0, *dataptr, stride, + *countptr, 0, transferdata); + } while(iternext(iter)); + + if (!needs_api) { + NPY_END_THREADS; + } + + PyArray_FreeStridedTransferData(transferdata); + NpyIter_Deallocate(iter); + + return 0; +} + +/*NUMPY_API + * Copy an array. + */ NPY_NO_EXPORT PyObject * PyArray_NewCopy(PyArrayObject *m1, NPY_ORDER fortran) { diff --git a/numpy/core/src/multiarray/einsum.c.src b/numpy/core/src/multiarray/einsum.c.src index d7dc73a23..97905ca54 100644 --- a/numpy/core/src/multiarray/einsum.c.src +++ b/numpy/core/src/multiarray/einsum.c.src @@ -17,6 +17,12 @@ #include <ctype.h> +typedef enum { + BROADCAST_LEFT, + BROADCAST_RIGHT, + BROADCAST_MIDDLE +} EINSUM_BROADCAST; + /* * Parses the subscripts for one operand into an output * of 'ndim' labels @@ -28,9 +34,11 @@ parse_operand_subscripts(char *subscripts, int length, char *out_label_counts, int *out_min_label, int *out_max_label, - int *out_num_labels) + int *out_num_labels, + EINSUM_BROADCAST *out_broadcast) { int i, idim, ndim_left, label; + int left_labels = 0, right_labels = 0; printf("Parsing operand %d subscripts\n", iop); @@ -55,6 +63,7 @@ parse_operand_subscripts(char *subscripts, int length, (*out_num_labels)++; } out_label_counts[label]++; + right_labels = 1; } else { PyErr_Format(PyExc_ValueError, @@ -114,6 +123,7 @@ parse_operand_subscripts(char *subscripts, int length, (*out_num_labels)++; } out_label_counts[label]++; + left_labels = 1; } else { PyErr_Format(PyExc_ValueError, @@ -161,6 +171,16 @@ parse_operand_subscripts(char *subscripts, int length, } } + if (left_labels && right_labels) { + *out_broadcast = BROADCAST_MIDDLE; + } + else if (!left_labels) { + *out_broadcast = BROADCAST_RIGHT; + } + else { + *out_broadcast = BROADCAST_LEFT; + } + return 1; } @@ -173,9 +193,11 @@ static int parse_output_subscripts(char *subscripts, int length, int ndim_broadcast, const char *label_counts, - char *out_labels) + char *out_labels, + EINSUM_BROADCAST *out_broadcast) { int i, nlabels, label, idim, ndim, ndim_left; + int left_labels = 0, right_labels = 0; /* Count the labels, making sure they're all unique and valid */ nlabels = 0; @@ -230,6 +252,7 @@ parse_output_subscripts(char *subscripts, int length, "too many output subscripts"); return -1; } + right_labels = 1; } /* The end of the ellipsis */ else { @@ -269,6 +292,7 @@ parse_output_subscripts(char *subscripts, int length, "too many subscripts for the output"); return -1; } + left_labels = 1; } else { PyErr_SetString(PyExc_ValueError, @@ -284,9 +308,353 @@ parse_output_subscripts(char *subscripts, int length, out_labels[idim++] = 0; } + if (left_labels && right_labels) { + *out_broadcast = BROADCAST_MIDDLE; + } + else if (!left_labels) { + *out_broadcast = BROADCAST_RIGHT; + } + else { + *out_broadcast = BROADCAST_LEFT; + } + return ndim; } + +/* + * When there's just one operand and no reduction, we + * can return a view into op. This calculates the view + * if possible. + */ +static int +get_single_op_view(PyArrayObject *op, int iop, char *labels, + int ndim_output, char *output_labels, + PyArrayObject **ret) +{ + npy_intp new_strides[NPY_MAXDIMS]; + npy_intp new_dims[NPY_MAXDIMS]; + char *out_label; + int label, i, idim, ndim, ibroadcast = 0; + + ndim = PyArray_NDIM(op); + + /* Initialize the dimensions and strides to zero */ + for (idim = 0; idim < ndim_output; ++idim) { + new_dims[idim] = 0; + new_strides[idim] = 0; + } + + /* Match the labels in the operand with the output labels */ + for (idim = 0; idim < ndim; ++idim) { + printf("Matching label for dimension %d\n", idim); + label = labels[idim]; + /* If this label says to merge axes, get the actual label */ + if (label < 0) { + label = labels[idim+label]; + } + /* If the label is 0, it's an unlabeled broadcast dimension */ + if (label == 0) { + /* The next output label that's a broadcast dimension */ + for (; ibroadcast < ndim_output; ++ibroadcast) { + if (output_labels[ibroadcast] == 0) { + break; + } + } + if (ibroadcast == ndim_output) { + PyErr_SetString(PyExc_ValueError, + "output had too few broadcast dimensions"); + return 0; + } + new_dims[ibroadcast] = PyArray_DIM(op, idim); + new_strides[ibroadcast] = PyArray_STRIDE(op, idim); + ++ibroadcast; + } + else { + /* Find the position for this dimension in the output */ + out_label = (char *)memchr(output_labels, label, + ndim_output); + /* If it's not found, reduction -> can't return a view */ + if (out_label == NULL) { + break; + } + /* Update the dimensions and strides of the output */ + i = out_label - output_labels; + if (new_dims[i] != 0 && + new_dims[i] != PyArray_DIM(op, idim)) { + PyErr_Format(PyExc_ValueError, + "dimensions in operand %d for collapsing " + "index '%c' don't match (%d != %d)", + iop, label, (int)new_dims[i], + (int)PyArray_DIM(op, idim)); + return 0; + } + new_dims[i] = PyArray_DIM(op, idim); + new_strides[i] += PyArray_STRIDE(op, idim); + } + } + /* If we processed all the input axes, return a view */ + if (idim == ndim) { + printf("Returning a view\n"); + Py_INCREF(PyArray_DESCR(op)); + *ret = (PyArrayObject *)PyArray_NewFromDescr( + Py_TYPE(op), + PyArray_DESCR(op), + ndim_output, new_dims, new_strides, + PyArray_DATA(op), + 0, (PyObject *)op); + + if (*ret == NULL) { + return 0; + } + if (!PyArray_Check(*ret)) { + Py_DECREF(*ret); + *ret = NULL; + PyErr_SetString(PyExc_RuntimeError, + "NewFromDescr failed to return an array"); + return 0; + } + PyArray_UpdateFlags(*ret, + NPY_C_CONTIGUOUS|NPY_ALIGNED|NPY_F_CONTIGUOUS); + Py_INCREF(op); + PyArray_BASE(*ret) = (PyObject *)op; + return 1; + } + + /* Return success, but that we couldn't make a view */ + *ret = NULL; + return 1; +} + +static PyArrayObject * +get_combined_dims_view(PyArrayObject *op, int iop, char *labels) +{ + npy_intp new_strides[NPY_MAXDIMS]; + npy_intp new_dims[NPY_MAXDIMS]; + int i, idim, ndim, icombine, combineoffset, label; + int icombinemap[NPY_MAXDIMS]; + + PyArrayObject *ret = NULL; + + ndim = PyArray_NDIM(op); + + /* Initialize the dimensions and strides to zero */ + for (idim = 0; idim < ndim; ++idim) { + new_dims[idim] = 0; + new_strides[idim] = 0; + } + + /* Copy the dimensions and strides, except when collapsing */ + icombine = 0; + for (idim = 0; idim < ndim; ++idim) { + printf("Processing dimension %d\n", idim); + label = labels[idim]; + /* If this label says to merge axes, get the actual label */ + if (label < 0) { + combineoffset = label; + label = labels[idim+label]; + } + else { + combineoffset = 0; + if (icombine != idim) { + labels[icombine] = labels[idim]; + } + icombinemap[idim] = icombine; + } + /* If the label is 0, it's an unlabeled broadcast dimension */ + if (label == 0) { + new_dims[icombine] = PyArray_DIM(op, idim); + new_strides[icombine] = PyArray_STRIDE(op, idim); + } + else { + /* Update the combined axis dimensions and strides */ + i = idim + combineoffset; + if (combineoffset < 0 && + new_dims[i] != PyArray_DIM(op, idim)) { + PyErr_Format(PyExc_ValueError, + "dimensions in operand %d for collapsing " + "index '%c' don't match (%d != %d)", + iop, label, (int)new_dims[i], + (int)PyArray_DIM(op, idim)); + return NULL; + } + i = icombinemap[i]; + new_dims[i] = PyArray_DIM(op, idim); + new_strides[i] += PyArray_STRIDE(op, idim); + } + + /* If the label didn't say to combine axes, increment dest i */ + if (combineoffset == 0) { + icombine++; + } + } + + /* The compressed number of dimensions */ + ndim = icombine; + + Py_INCREF(PyArray_DESCR(op)); + ret = (PyArrayObject *)PyArray_NewFromDescr( + Py_TYPE(op), + PyArray_DESCR(op), + ndim, new_dims, new_strides, + PyArray_DATA(op), + PyArray_ISWRITEABLE(op) ? NPY_WRITEABLE : 0, + (PyObject *)op); + + if (ret == NULL) { + return NULL; + } + if (!PyArray_Check(ret)) { + Py_DECREF(ret); + PyErr_SetString(PyExc_RuntimeError, + "NewFromDescr failed to return an array"); + return NULL; + } + PyArray_UpdateFlags(ret, + NPY_C_CONTIGUOUS|NPY_ALIGNED|NPY_F_CONTIGUOUS); + Py_INCREF(op); + PyArray_BASE(ret) = (PyObject *)op; + + return ret; +} + +static int +prepare_op_axes(int ndim, int iop, char *labels, npy_intp *axes, + npy_intp ndim_iter, char *iter_labels, EINSUM_BROADCAST broadcast) +{ + int i, label, ibroadcast; + + /* Regular broadcasting */ + if (broadcast == BROADCAST_RIGHT) { + /* broadcast dimensions get placed in rightmost position */ + ibroadcast = ndim-1; + for (i = ndim_iter-1; i >= 0; --i) { + label = iter_labels[i]; + /* + * If it's an unlabeled broadcast dimension, choose + * the next broadcast dimension from the operand. + */ + if (label == 0) { + while (ibroadcast >= 0 && labels[ibroadcast] != 0) { + --ibroadcast; + } + /* + * If we used up all the operand broadcast dimensions, + * extend it with a "newaxis" + */ + if (ibroadcast < 0) { + axes[i] = -1; + } + /* Otherwise map to the broadcast axis */ + else { + axes[i] = ibroadcast; + } + } + /* It's a labeled dimension, find the matching one */ + else { + char *match = memchr(labels, label, ndim); + /* If the op doesn't have the label, broadcast it */ + if (match == NULL) { + axes[i] = -1; + } + /* Otherwise use it */ + else { + axes[i] = match - labels; + } + } + } + } + /* Reverse broadcasting */ + else if (broadcast == BROADCAST_LEFT) { + /* broadcast dimensions get placed in leftmost position */ + ibroadcast = 0; + for (i = 0; i < ndim_iter; ++i) { + label = iter_labels[i]; + /* + * If it's an unlabeled broadcast dimension, choose + * the next broadcast dimension from the operand. + */ + if (label == 0) { + while (ibroadcast < ndim && labels[ibroadcast] != 0) { + ++ibroadcast; + } + /* + * If we used up all the operand broadcast dimensions, + * extend it with a "newaxis" + */ + if (ibroadcast >= ndim) { + axes[i] = -1; + } + /* Otherwise map to the broadcast axis */ + else { + axes[i] = ibroadcast; + } + } + /* It's a labeled dimension, find the matching one */ + else { + char *match = memchr(labels, label, ndim); + /* If the op doesn't have the label, broadcast it */ + if (match == NULL) { + axes[i] = -1; + } + /* Otherwise use it */ + else { + axes[i] = match - labels; + } + } + } + } + /* Middle broadcasting */ + else { + /* broadcast dimensions get placed in leftmost position */ + ibroadcast = 0; + for (i = 0; i < ndim_iter; ++i) { + label = iter_labels[i]; + /* + * If it's an unlabeled broadcast dimension, choose + * the next broadcast dimension from the operand. + */ + if (label == 0) { + while (ibroadcast < ndim && labels[ibroadcast] != 0) { + ++ibroadcast; + } + /* + * If we used up all the operand broadcast dimensions, + * it's an error + */ + if (ibroadcast >= ndim) { + PyErr_Format(PyExc_ValueError, + "operand %d did not have enough dimensions " + "to match the broadcasting, and couldn't be " + "extended because einstein sum subscripts " + "were specified at both the start and end", + iop); + return 0; + } + /* Otherwise map to the broadcast axis */ + else { + axes[i] = ibroadcast; + } + } + /* It's a labeled dimension, find the matching one */ + else { + char *match = memchr(labels, label, ndim); + /* If the op doesn't have the label, broadcast it */ + if (match == NULL) { + axes[i] = -1; + } + /* Otherwise use it */ + else { + axes[i] = match - labels; + } + } + } + } + + return 1; +} + + /*NUMPY_API * This function provides summation of array elements according to * the Einstein summation convention. For example: @@ -312,9 +680,11 @@ parse_output_subscripts(char *subscripts, int length, * then c[i,j] = a[j]*b[i]. * * Alternatively, you can control the output order or prevent - * an axis from being summed by providing indices for the output. - * This allows us to turn 'trace' into 'diag', for example. + * an axis from being summed/force an axis to be summed by providing + * indices for the output. This allows us to turn 'trace' into + * 'diag', for example. * - diag(a) -> einsum("ii->i", a) + * - sum(a, axis=0) -> einsum("i...->", a) * * Subscripts at the beginning and end may be specified by * putting an ellipsis "..." in the middle. For example, @@ -337,12 +707,21 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, int iop, label, min_label = 127, max_label = 0, num_labels; char label_counts[128]; char op_labels[NPY_MAXARGS][NPY_MAXDIMS]; - char output_labels[NPY_MAXDIMS]; - int idim, ndim_output, ndim_broadcast; + char output_labels[NPY_MAXDIMS], *iter_labels; + int idim, ndim_output, ndim_broadcast, ndim_iter; - PyArrayObject *op[NPY_MAXARGS]; + EINSUM_BROADCAST broadcast[NPY_MAXARGS]; + PyArrayObject *op[NPY_MAXARGS], *ret = NULL; + PyArray_Descr *op_dtypes_array[NPY_MAXARGS], **op_dtypes; - if (nop > NPY_MAXARGS) { + npy_intp op_axes_arrays[NPY_MAXARGS][NPY_MAXDIMS]; + npy_intp *op_axes[NPY_MAXARGS]; + npy_uint32 op_flags[NPY_MAXARGS]; + + NpyIter *iter; + + /* nop+1 (+1 is for the output) must fit in NPY_MAXARGS */ + if (nop >= NPY_MAXARGS) { PyErr_SetString(PyExc_ValueError, "too many operands provided to einstein sum function"); return NULL; @@ -376,7 +755,8 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, if (!parse_operand_subscripts(subscripts, length, PyArray_NDIM(op_in[iop]), iop, op_labels[iop], label_counts, - &min_label, &max_label, &num_labels)) { + &min_label, &max_label, &num_labels, + &broadcast[iop])) { return NULL; } @@ -433,7 +813,7 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, /* Parse the output subscript string */ ndim_output = parse_output_subscripts(outsubscripts, length, ndim_broadcast, label_counts, - output_labels); + output_labels, &broadcast[nop]); } else { if (subscripts[0] != '-' || subscripts[1] != '>') { @@ -447,12 +827,20 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, /* Parse the output subscript string */ ndim_output = parse_output_subscripts(subscripts, strlen(subscripts), ndim_broadcast, label_counts, - output_labels); + output_labels, &broadcast[nop]); } if (ndim_output < 0) { return NULL; } + if (out != NULL && PyArray_NDIM(out) != ndim_output) { + PyErr_Format(PyExc_ValueError, + "out parameter does not have the correct number of " + "dimensions, has %d but should have %d", + (int)PyArray_NDIM(out), (int)ndim_output); + return NULL; + } + /* Set all the op references to NULL */ for (iop = 0; iop < nop; ++iop) { op[iop] = NULL; @@ -464,8 +852,6 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, */ printf("Processing inputs\n"); for (iop = 0; iop < nop; ++iop) { - npy_intp new_strides[NPY_MAXDIMS]; - npy_intp new_dims[NPY_MAXDIMS]; char *labels = op_labels[iop]; int combine, ndim; @@ -476,86 +862,16 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, * first try remapping the axes to the output to return * a view instead of a copy. */ - if (nop == 1 && out == NULL) { - char *out_label; - int i, ibroadcast = 0; - - /* Initialize the dimensions and strides to zero */ - for (idim = 0; idim < ndim_output; ++idim) { - new_dims[idim] = 0; - new_strides[idim] = 0; - } - /* Match the labels in the operand with the output labels */ - for (idim = 0; idim < ndim; ++idim) { - printf("Matching label for dimension %d\n", idim); - label = labels[idim]; - /* If this label says to merge axes, get the actual label */ - if (label < 0) { - label = labels[idim+label]; - } - /* If the label is 0, it's an unlabeled broadcast dimension */ - if (label == 0) { - /* The next output label that's a broadcast dimension */ - for (; ibroadcast < ndim_output; ++ibroadcast) { - if (output_labels[ibroadcast] == 0) { - break; - } - } - if (ibroadcast == ndim_output) { - PyErr_SetString(PyExc_ValueError, - "output had too few broadcast dimensions"); - return NULL; - } - new_dims[ibroadcast] = PyArray_DIM(op_in[iop], idim); - new_strides[ibroadcast] = PyArray_STRIDE(op_in[iop], idim); - ++ibroadcast; - } - else { - /* Find the position for this dimension in the output */ - out_label = (char *)memchr(output_labels, label, - ndim_output); - /* If it's not found, reduction -> can't return a view */ - if (out_label == NULL) { - break; - } - /* Update the dimensions and strides of the output */ - i = out_label - output_labels; - if (new_dims[i] != 0 && - new_dims[i] != PyArray_DIM(op_in[iop], idim)) { - PyErr_Format(PyExc_ValueError, - "dimensions in operand %d for collapsing " - "index '%c' don't match (%d != %d)", - iop, label, (int)new_dims[i], - (int)PyArray_DIM(op_in[iop], idim)); - return NULL; - } - new_dims[i] = PyArray_DIM(op_in[iop], idim); - new_strides[i] += PyArray_STRIDE(op_in[iop], idim); - } + if (iop == 0 && nop == 1 && out == NULL) { + PyArrayObject *ret = NULL; + + if (!get_single_op_view(op_in[iop], iop, labels, + ndim_output, output_labels, + &ret)) { + return NULL; } - /* If we processed all the input axes, return a view */ - if (idim == ndim) { - printf("Returning a view\n"); - Py_INCREF(PyArray_DESCR(op_in[iop])); - op[iop] = (PyArrayObject *)PyArray_NewFromDescr( - Py_TYPE(op_in[iop]), - PyArray_DESCR(op_in[iop]), - ndim_output, new_dims, new_strides, - PyArray_DATA(op_in[iop]), - 0, (PyObject *)op_in[iop]); - - if (op[iop] == NULL) { - return NULL; - } - if (!PyArray_Check(op[iop])) { - Py_DECREF(op[iop]); - PyErr_SetString(PyExc_RuntimeError, - "NewFromDescr failed to return an array"); - return NULL; - } - Py_INCREF(op_in[iop]); - PyArray_BASE(op[iop]) = (PyObject *)op_in[iop]; - return op[iop]; + if (ret != NULL) { + return ret; } } @@ -567,86 +883,115 @@ PyArray_EinsteinSum(char *subscripts, npy_intp nop, } } - PyErr_SetString(PyExc_RuntimeError, "not implemented yet"); - return NULL; + /* If any dimensions are combined, create a view which combines them */ + if (combine) { + op[iop] = get_combined_dims_view(op_in[iop], iop, labels); + if (op[iop] == NULL) { + goto fail; + } + } + /* No combining needed */ + else { + Py_INCREF(op_in[iop]); + op[iop] = op_in[iop]; + } } - PyErr_SetString(PyExc_RuntimeError, "not implemented yet"); - return NULL; + /* Set the output op */ + op[nop] = out; -#if 0 - /* Copy the dimensions before the labels without changes */ - for (idim = 0; idim < ndim-nlabels; ++i) { - new_strides[idim] = PyArray_STRIDE(op[iop], idim); - new_dims[idim] = PyArray_DIM(op[iop], idim); - } - /* Process the labels for the rest */ - for (ilabels = 0; ilabels < nlabels; ++ilabels) { - label = labels[ilabels]; - if (label_counts[label] > 1) { - /* If this label occurs earlier, merge it */ - for (jlabels = 0; jlabels < ilabels; ++jlabels) { - if (labels[jlabels] == label) { - if (new_dims[jlabels+ndims-nlabels] != - PyArray_DIM(op[iop], ilabels+ndims-nlabels)) { - PyErr_Format(PyExc_ValueError, - "operand %d has a repeated label, but " - "the dimensions for the label don't match", - (int)iop); - goto fail; - } - new_strides[jlabels+ndims-nlabels] += - PyArray_STRIDE(op[iop], ilabels+ndims-nlabels); - /* Indicate this label should be removed */ - labels[ilabels] = 0; - break; - } - } - } - } - /* Collapse the labels that got cleared */ - jlabels = 0; - for (ilabels = 0; ilabels < nlabels; ++ilabels) { - if (labels[ilabels] != 0) { - if (jlabels != ilabels) { - labels[jlabels] = labels[ilabels]; - i = ilabels+ndims-nlabels; - new_strides[idim] = new_strides[i]; - new_dims[idim] = new_dims[i]; - } - idim++; - jlabels++; - } - else { - op_nlabels[iop]--; - } - } - /* If the dimensions shrunk, make a new view */ - if (idim != ndim) { - ndim = idim; - Py_INCREF(PyArray_DESCR(op_in[iop])); - op[iop] = PyArray_NewFromDescr(&PyArray_Type, - PyArray_DESCR(op_in[iop]), - ndim, new_dims, new_strides, - PyArray_DATA(op_in[iop]), - 0, NULL); - if (op[iop] == NULL) { + /* + * Set up the labels for the iterator (output + combined labels). + * Can just share the output_labels memory, because iter_labels + * is output_labels with some more labels appended. + */ + iter_labels = output_labels; + ndim_iter = ndim_output; + for (label = min_label; label <= max_label; ++label) { + if (label_counts[label] > 0 && + memchr(output_labels, label, ndim_output) == NULL) { + if (ndim_iter >= NPY_MAXDIMS) { + PyErr_SetString(PyExc_ValueError, + "too many subscripts in einsum"); goto fail; } - Py_INCREF(op_in[iop]); - PyArray_BASE(op[iop]) = (PyObject *)op_in[iop]; + iter_labels[ndim_iter++] = label; } - /* Otherwise just take a reference */ - else { - op[iop] = op_in[iop] - Py_INCREF(op[iop]); + } + + /* Set up the op_axes for the iterator */ + for (iop = 0; iop < nop; ++iop) { + op_axes[iop] = op_axes_arrays[iop]; + + if (!prepare_op_axes(PyArray_NDIM(op[iop]), iop, op_labels[iop], + op_axes[iop], ndim_iter, iter_labels, broadcast[iop])) { + goto fail; } } -goto fail; + + /* Set up the op_dtypes if dtype was provided */ + if (dtype == NULL) { + op_dtypes = NULL; + } + else { + op_dtypes = op_dtypes_array; + for (iop = 0; iop <= nop; ++iop) { + op_dtypes[iop] = dtype; + } + } + + /* Set the op_axes for the output */ + op_axes[nop] = op_axes_arrays[nop]; + for (idim = 0; idim < ndim_output; ++idim) { + op_axes[nop][idim] = idim; + } + for (idim = ndim_output; idim < ndim_iter; ++idim) { + op_axes[nop][idim] = -1; + } + + /* Set the iterator per-op flags */ + + for (iop = 0; iop < nop; ++iop) { + op_flags[iop] = NPY_ITER_READONLY| + NPY_ITER_NBO| + NPY_ITER_ALIGNED; + } + op_flags[nop] = NPY_ITER_READWRITE| + NPY_ITER_NBO| + NPY_ITER_ALIGNED| + NPY_ITER_ALLOCATE| + NPY_ITER_NO_BROADCAST; + + /* Allocate the iterator */ + iter = NpyIter_MultiNew(nop+1, op, NPY_ITER_NO_INNER_ITERATION| + ((dtype == NULL) ? 0 : NPY_ITER_COMMON_DTYPE)| + NPY_ITER_BUFFERED| + NPY_ITER_DELAY_BUFALLOC| + NPY_ITER_GROWINNER| + NPY_ITER_REDUCE_OK, + order, casting, + op_flags, op_dtypes, + ndim_iter, op_axes, 0); + + if (iter == NULL) { + goto fail; + } + + /* Initialize the output to all zeros */ + ret = NpyIter_GetOperandArray(iter)[nop]; + Py_INCREF(ret); + PyArray_FillWithZero(ret); + NpyIter_Reset(iter, NULL); + + NpyIter_DebugPrint(iter); + NpyIter_Deallocate(iter); + + return ret; + +fail: for (iop = 0; iop < nop; ++iop) { Py_XDECREF(op[iop]); } return NULL; -#endif } diff --git a/numpy/core/src/multiarray/new_iterator.c.src b/numpy/core/src/multiarray/new_iterator.c.src index 78725f8c9..30ca459ab 100644 --- a/numpy/core/src/multiarray/new_iterator.c.src +++ b/numpy/core/src/multiarray/new_iterator.c.src @@ -18,7 +18,7 @@ #include "lowlevel_strided_loops.h" /********** PRINTF DEBUG TRACING **************/ -#define NPY_IT_DBG_TRACING 0 +#define NPY_IT_DBG_TRACING 1 #if NPY_IT_DBG_TRACING #define NPY_IT_DBG_PRINTF(...) printf(__VA_ARGS__) @@ -2555,6 +2555,8 @@ npyiter_prepare_one_operand(PyArrayObject **op, Py_DECREF(*op_dtype); *op_dtype = nbo_dtype; + NPY_IT_DBG_PRINTF("Iterator: Setting NPY_OP_ITFLAG_CAST " + "because of NPY_ITER_NBO\n"); /* Indicate that byte order or alignment needs fixing */ *op_itflags |= NPY_OP_ITFLAG_CAST; } @@ -2563,6 +2565,8 @@ npyiter_prepare_one_operand(PyArrayObject **op, if (op_flags&NPY_ITER_ALIGNED) { /* Check alignment */ if (!PyArray_ISALIGNED(*op)) { + NPY_IT_DBG_PRINTF("Iterator: Setting NPY_OP_ITFLAG_CAST " + "because of NPY_ITER_ALIGNED\n"); *op_itflags |= NPY_OP_ITFLAG_CAST; } } @@ -2709,6 +2713,8 @@ npyiter_check_casting(npy_intp niter, PyArrayObject **op, return 0; } + NPY_IT_DBG_PRINTF("Iterator: Setting NPY_OP_ITFLAG_CAST " + "because the types aren't equivalent\n"); /* Indicate that this operand needs casting */ op_itflags[iiter] |= NPY_OP_ITFLAG_CAST; } @@ -3784,6 +3790,9 @@ npyiter_new_temp_array(NpyIter *iter, PyTypeObject *subtype, } if (i >= 0) { + NPY_IT_DBG_PRINTF("Iterator: Setting allocated stride %d " + "for iterator dimension %d to %d\n", (int)i, + (int)idim, (int)stride); strides[i] = stride; if (p < 0) { reversestride[i] = 1; @@ -3808,7 +3817,13 @@ npyiter_new_temp_array(NpyIter *iter, PyTypeObject *subtype, axisdata = NIT_AXISDATA(iter); for (idim = 0; idim < op_ndim; ++idim) { + NPY_IT_DBG_PRINTF("Iterator: Checking allocated output " + "dimension %d with stride %d\n", + (int)idim, (int)strides[idim]); if (strides[idim] == NPY_MAX_INTP) { + NPY_IT_DBG_PRINTF("Iterator: The axis wasn't used, " + "and its dimension is %d\n", + (int)NAD_SHAPE(axisdata)); /* * If deleting this axis produces a reduction, but * reduction wasn't enabled, throw an error @@ -3827,6 +3842,8 @@ npyiter_new_temp_array(NpyIter *iter, PyTypeObject *subtype, return NULL; } + NPY_IT_DBG_PRINTF("Iterator: Indicating that a reduction " + "is occurring\n"); /* Indicate that a reduction is occurring */ NIT_ITFLAGS(iter) |= NPY_ITFLAG_REDUCE; } @@ -4067,6 +4084,8 @@ npyiter_allocate_arrays(NpyIter *iter, npy_intp stride = NAD_STRIDES(axisdata)[iiter]; if (stride != op_dtype[iiter]->elsize) { + NPY_IT_DBG_PRINTF("Iterator: Setting NPY_OP_ITFLAG_CAST " + "because of NPY_ITER_CONTIG\n"); op_itflags[iiter] |= NPY_OP_ITFLAG_CAST; if (!(itflags&NPY_ITFLAG_BUFFER)) { PyErr_SetString(PyExc_TypeError, @@ -4142,7 +4161,9 @@ npyiter_allocate_arrays(NpyIter *iter, } else if (!is_one_to_one && (op_itflags[iiter]&NPY_OP_ITFLAG_WRITE) && - !(itflags&NPY_ITFLAG_REDUCE)) { + !(flags&NPY_ITER_REDUCE_OK)) { + NPY_IT_DBG_PRINTF("Iterator: %d %d %d\n", + (int)(!is_one_to_one), (int)((op_itflags[iiter]&NPY_OP_ITFLAG_WRITE)), (int)(!(flags&NPY_ITER_REDUCE_OK))); PyErr_SetString(PyExc_ValueError, "Iterator operand requires write buffering, " "but has dimensions which have been broadcasted " @@ -4856,6 +4877,8 @@ NpyIter_DebugPrint(NpyIter *iter) printf("DELAYBUF "); if (itflags&NPY_ITFLAG_NEEDSAPI) printf("NEEDSAPI "); + if (itflags&NPY_ITFLAG_REDUCE) + printf("REDUCE "); printf("\n"); printf("NDim: %d\n", (int)ndim); printf("NIter: %d\n", (int)niter); diff --git a/numpy/core/tests/test_numeric.py b/numpy/core/tests/test_numeric.py index 5937c6e9a..62f10693c 100644 --- a/numpy/core/tests/test_numeric.py +++ b/numpy/core/tests/test_numeric.py @@ -208,6 +208,7 @@ class TestEinSum(TestCase): assert_raises(ValueError, np.einsum, "ij->jij", [[0,0],[0,0]]) # dimensions much match when being collapsed + assert_raises(ValueError, np.einsum, "ii", np.arange(6).reshape(2,3)) assert_raises(ValueError, np.einsum, "ii->i", np.arange(6).reshape(2,3)) def test_einsum_views(self): |