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* Merge pull request #4273 from juliantaylor/test-file-leakJulian Taylor2014-02-091-7/+8
|\ | | | | TST: clean up tempfile in test_closing_zipfile_after_load
| * TST: clean up tempfile in test_closing_zipfile_after_loadJulian Taylor2014-02-081-7/+8
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* | TST: fix test_io.TestSavezLoadJulian Taylor2014-02-081-1/+1
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* ENH: remove insecure mktemp useJulian Taylor2014-02-061-8/+16
| | | | | mktemp only returns a filename, a malicous user could replace it before it gets used.
* TST: Increase test coverage of numpy.save/load roundtripsOlivier Grisel2013-11-261-6/+36
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* MAINT: io: handle a bad fmt argument in savetxt by raising a ValueError.Warren Weckesser2013-10-201-0/+4
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* STY: Make numpy/lib/test/*.py PEP8 compliant.Charles Harris2013-09-031-129/+110
| | | | | | | Run autopep8 over the test files in numpy/lib/test and make fixes to the result. Also remove Python5 workaround.
* STY: Giant comma spacing fixup.Charles Harris2013-08-181-2/+2
| | | | | | | Run the 2to3 ws_comma fixer on *.py files. Some lines are now too long and will need to be broken at some point. OTOH, some lines were already too long and need to be broken at some point. Now seems as good a time as any to do this with open PRs at a minimum.
* TST: Test that savetxt works with objects having a write method.Daniel2013-08-151-0/+12
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* MAINT: Remove uses of the WarningManager class.Charles Harris2013-07-121-26/+10
| | | | | | | | | | | | WarningManager was a workaround for the lack of the with statement in Python versions < 2.6. As those versions are no longer supported it can be removed. Deprecation notes are added to WarningManager and WarningMessage, but to avoid a cascade of messages in third party apps, no warnings are raised at this time, that can be done later. Closes #3519.
* BUG: Make np.load transfer file ownership to the returned NpzFile.Charles Harris2013-06-221-1/+13
| | | | | | | This assures that when the loaded file is closed it also closes the file descriptor, avoiding a resource warning in Python3. Closes #3457.
* adjust the optimal IO buffer size for npz filesBartosz Telenczuk2013-06-121-5/+3
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* BUG: fix loading large npz files (fixes #2922)Bartosz Telenczuk2013-06-121-1/+18
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* 2to3: Apply zip fixer.Charles Harris2013-04-131-2/+2
| | | | | | | | | | In Python 3 zip returns an iterator instead of a list. Consequently, in places where an iterator won't do it must be enclosed in list(...). Lists instead of iterators are also used in array constructors as using iterators there usually results in an object array containing an iterator object. Closes #3094
* 2to3: apply `dict` fixer.Charles Harris2013-04-061-2/+2
| | | | | | | | | | | | | | | In Python3 `dict.items()`, `dict.keys()`, and `dict.values()` are iterators. This causes problems when a list is needed so the 2to3 fixer explicitly constructs a list when is finds on of those functions. However, that is usually not necessary, so a lot of the work here has been cleaning up those places where the fix is not needed. The big exception to that is the `numpy/f2py/crackfortran.py` file. The code there makes extensive use of loops that modify the contents of the dictionary being looped through, which raises an error. That together with the obscurity of the code in that file made it safest to let the `dict` fixer do its worst. Closes #3050.
* 2to3: Apply `print` fixer.Charles Harris2013-04-061-1/+1
| | | | | | | Add `print_function` to all `from __future__ import ...` statements and use the python3 print function syntax everywhere. Closes #3078.
* 2to3: Apply `imports` fixer.Charles Harris2013-04-021-223/+238
| | | | | | | | | | | | | | | | | | | | | | | | | | | | The `imports` fixer deals with the standard packages that have been renamed, removed, or methods that have moved. cPickle -- removed, use pickle commands -- removed, getoutput, getstatusoutput moved to subprocess urlparse -- removed, urlparse moved to urllib.parse cStringIO -- removed, use StringIO or io.StringIO copy_reg -- renamed copyreg _winreg -- renamed winreg ConfigParser -- renamed configparser __builtin__ -- renamed builtins In the case of `cPickle`, it is imported as `pickle` when python < 3 and performance may be a consideration, but otherwise plain old `pickle` is used. Dealing with `StringIO` is a bit tricky. There is an `io.StringIO` function in the `io` module, available since Python 2.6, but it expects unicode whereas `StringIO.StringIO` expects ascii. The Python 3 equivalent is then `io.BytesIO`. What I have done here is used BytesIO for anything that is emulating a file for testing purposes. That is more explicit than using a redefined StringIO as was done before we dropped support for Python 2.4 and 2.5. Closes #3180.
* 2to3: Use absolute imports.Charles Harris2013-03-281-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The new import `absolute_import` is added the `from __future__ import` statement and The 2to3 `import` fixer is run to make the imports compatible. There are several things that need to be dealt with to make this work. 1) Files meant to be run as scripts run in a different environment than files imported as part of a package, and so changes to those files need to be skipped. The affected script files are: * all setup.py files * numpy/core/code_generators/generate_umath.py * numpy/core/code_generators/generate_numpy_api.py * numpy/core/code_generators/generate_ufunc_api.py 2) Some imported modules are not available as they are created during the build process and consequently 2to3 is unable to handle them correctly. Files that import those modules need a bit of extra work. The affected files are: * core/__init__.py, * core/numeric.py, * core/_internal.py, * core/arrayprint.py, * core/fromnumeric.py, * numpy/__init__.py, * lib/npyio.py, * lib/function_base.py, * fft/fftpack.py, * random/__init__.py Closes #3172
* 2to3: Replace xrange by range and use list(range(...)) where neededCharles Harris2013-03-271-1/+1
| | | | | | | | | | | | | | | In python3 range is an iterator and `xrange` has been removed. This has two consequence for code: 1) Where a list is needed `list(range(...))` must be used. 2) `xrange` must be replaced by `range` Both of these changes also work in python2 and this patch makes both. There are three places fixed that do not need it, but I left them in so that the result would be `xrange` clean. Closes #3092
* TST: Get rid of a ResourceWarning.Charles Harris2013-03-031-6/+15
| | | | | | | | I'm not sure this is the right fix, but test_closing_fid need to check that garbage collection will close a file that goes through a bunch of openings followed by dropping the reference. So the fix is to ignore warnings during the test. I'd just ignore ResourceWarning, but it does not look to be a built in warning in Python 2.7.
* 2to3: Put `from __future__ import division in every python file.Charles Harris2013-03-011-0/+2
| | | | | | | | This should be harmless, as we already are division clean. However, placement of this import takes some care. In the future a script can be used to append new features without worry, at least until such time as it exceeds a single line. Having that ability will make it easier to deal with absolute imports and printing updates.
* 2to3: Use modern exception syntax.Charles Harris2013-02-261-2/+2
| | | | Example: except ValueError,msg: -> except ValueError as msg:
* Fix `WindowsError: [Error 32]` in test_not_closing_opened_fid ↵cgohlke2012-07-161-0/+1
| | | | (test_io.TestSavezLoad)
* BUG: genfromtxt: make comments=None work with spaces in strings.Ralf Gommers2012-07-111-0/+3
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* BUG: make genfromtxt work with comments=None. Closes Github issue 329.martingoodson2012-07-101-3/+5
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* BF(PY3): open file handles in tests in binary modeYaroslav Halchenko2012-07-061-3/+3
| | | | | otherwise zipfile of python3 gets confused to receive bytes for the header whenever handle is opened for a text (unicode) file
* ENH: added a rudimentary test for having #1517 (too many open files) fixedYaroslav Halchenko2012-07-051-0/+24
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* ENH: unittest for preceeding commit fixing #2178Yaroslav Halchenko2012-07-021-0/+21
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* BUG: Fix some test bugs.Charles Harris2012-05-021-4/+4
| | | | | Fix incorrect python version checks in test_print.py. Fix missing build_err_msg import and wrong variable in test_io.py.
* TST: fix string comparison test failures on Windows for Python 2.5.Ralf Gommers2012-03-071-3/+22
| | | | | | | | | | | | | This is caused by the inconsistent floating point handling of Python itself. On Windows with 2.5: >>> "%s" % 1e-6 '1e-006' With 2.6: >>> "%s" % 1e-6 '1e-06' Reviewed as PR-225.
* TST: filter one more printed warning.Ralf Gommers2012-03-021-3/+12
| | | | | This one wasn't actually converted to a test error, because it's not a RuntimeWarning. Maybe need to add an option to raise on UserWarning too.
* ENH: lib: break reference cycle in NpzFile (#2048)Pauli Virtanen2012-02-161-0/+15
| | | | | This allows these objects to be freed by refcount, rather than requiring the gc, which can be useful in some situations.
* BUG: Fix improper usage of warning filters in the testsMark Wiebe2012-02-081-30/+46
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* BUG: savetxt now handles complex arrays. Closes #1573.Paul Anton Letnes2011-12-281-0/+33
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* ENH: Add provision for headers and footers to savetxt, fixes ticket 1236.Paul Anton Letnes2011-08-151-0/+35
| | | | | I suggest using a separate keyword argument for structured arrays. It might also be nice to be able to add a manual header.
* BUG: fix failing npyio test under py3k. Thanks to Derek Homeier. Closes #1793.Ralf Gommers2011-08-101-0/+1
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* ENH: let genfromtxt return empty array for empty input file instead of an error.Paul Anton Letnes2011-07-311-5/+6
| | | | A warning for empty files is issued, including file name. Closes #1793.
* BUG: datetime: Various fixes for datetime arrays.Ben Walsh2011-07-191-0/+9
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* use np.atleast_Nd() to boost dimensions to ndminDerek Homeier2011-05-071-2/+16
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* changed ndmin option in loadtxt to return shape (1, X.size) for single-row ↵Derek Homeier2011-05-071-2/+8
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* TST: test for different line endings in genfromtxt input file. NoteMatthew Brett2011-04-061-25/+27
| | | | | that the test for '\r' is skipped for python 3k since it is known to fail.
* STY: Replace assert by assert_ in tests. There remain 124 uses ofCharles Harris2011-04-051-8/+8
| | | | assert in non-testing files that should be checked for correctness.
* BUG: ticket #1071, fix loadtxt to handle tab delimited data with missingDerek Homeir2011-04-041-8/+14
| | | | values in the last column and add test for same.
* ENH: Let genfromtxt accept generators as text sources. Add testCharles Harris2011-04-031-1/+9
| | | | for that case.
* BUG: Fix strings for Python 3k.Charles Harris2011-04-031-1/+1
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* ENH: ticket #1616, let loadtxt accept generators in additions toCharles Harris2011-04-031-0/+7
| | | | file names and file like objects. Add test for for new functionality.
* ENH: add ndmin keyword to loadtxt. Closes #1562.Ralf Gommers2011-04-031-0/+17
| | | | Thanks to Paul Anton Letnes and Derek Homeier.
* ENH: return empty array from loadtxt for an empty file. Closes #1752.Ralf Gommers2011-04-031-2/+7
| | | | Thanks to Paul Anton Letnes and Derek Homeier.
* TST: add test for ticket #1458.Charles Harris2011-04-021-1/+12
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* BUG: ticket #1565, fix conversion of int64 and uint64 types by loadtxt.Christoph Gohlke2011-04-021-0/+16
| | | | Add some tests for these types.