# # chemicalFormulas.py # # Copyright (c) 2003,2019 Paul McGuire # import pyparsing as pp atomicWeight = { "O": 15.9994, "H": 1.00794, "Na": 22.9897, "Cl": 35.4527, "C": 12.0107, } digits = "0123456789" # Version 1 element = pp.Word(pp.alphas.upper(), pp.alphas.lower(), max=2).set_name("element") # for stricter matching, use this Regex instead # element = Regex("A[cglmrstu]|B[aehikr]?|C[adeflmorsu]?|D[bsy]|" # "E[rsu]|F[emr]?|G[ade]|H[efgos]?|I[nr]?|Kr?|L[airu]|" # "M[dgnot]|N[abdeiop]?|Os?|P[abdmortu]?|R[abefghnu]|" # "S[bcegimnr]?|T[abcehilm]|U(u[bhopqst])?|V|W|Xe|Yb?|Z[nr]") elementRef = pp.Group(element + pp.Optional(pp.Word(digits), default="1")) formula = elementRef[...] def sum_atomic_weights(element_list): return sum(atomicWeight[elem] * int(qty) for elem, qty in element_list) formula.runTests( """\ H2O C6H5OH NaCl """, fullDump=False, postParse=lambda _, tokens: "Molecular weight: {}".format( sum_atomic_weights(tokens) ), ) print() # Version 2 - access parsed items by results name elementRef = pp.Group( element("symbol") + pp.Optional(pp.Word(digits), default="1")("qty") ) formula = elementRef[...] def sum_atomic_weights_by_results_name(element_list): return sum(atomicWeight[elem.symbol] * int(elem.qty) for elem in element_list) formula.runTests( """\ H2O C6H5OH NaCl """, fullDump=False, postParse=lambda _, tokens: "Molecular weight: {}".format( sum_atomic_weights_by_results_name(tokens) ), ) print() # Version 3 - convert integers during parsing process integer = pp.Word(digits).setParseAction(lambda t: int(t[0])).setName("integer") elementRef = pp.Group(element("symbol") + pp.Optional(integer, default=1)("qty")) formula = elementRef[...].setName("chemical_formula") def sum_atomic_weights_by_results_name_with_converted_ints(element_list): return sum(atomicWeight[elem.symbol] * int(elem.qty) for elem in element_list) formula.runTests( """\ H2O C6H5OH NaCl """, fullDump=False, postParse=lambda _, tokens: "Molecular weight: {}".format( sum_atomic_weights_by_results_name_with_converted_ints(tokens) ), ) print() # Version 4 - parse and convert integers as subscript digits subscript_digits = "₀₁₂₃₄₅₆₇₈₉" subscript_int_map = {e[1]: e[0] for e in enumerate(subscript_digits)} def cvt_subscript_int(s): ret = 0 for c in s[0]: ret = ret * 10 + subscript_int_map[c] return ret subscript_int = pp.Word(subscript_digits).addParseAction(cvt_subscript_int).set_name("subscript") elementRef = pp.Group(element("symbol") + pp.Optional(subscript_int, default=1)("qty")) formula = elementRef[1, ...].setName("chemical_formula") formula.runTests( """\ H₂O C₆H₅OH NaCl """, fullDump=False, postParse=lambda _, tokens: "Molecular weight: {}".format( sum_atomic_weights_by_results_name_with_converted_ints(tokens) ), ) print()