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* Remove old Appveyor cruft
* Fix Windows issue
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* Add isort to pre-commit
* Run isort on all python files (except __init__.py ones)
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* Don't use graph6 with directed graphs (#5443)
* Parametrize graph6 tests
* Test graph6 on multigraphs
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* CI: sync up black dev requirements version with precommit
* Run black
Co-authored-by: Jarrod Millman <jarrod.millman@gmail.com>
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* Format code w/ black
* Format docstrings w/ black
* Manual cleanup
* Tell pytest to ignore planned deprecations
* Don't call plt.show during testing
* Another known deprecation
* DOC: rm duplicate line from docstring example
* Minor cleanup
Co-authored-by: Ross Barnowski <rossbar@berkeley.edu>
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The argument for from_graph6_bytes was originally named "string" but
the function expected a bytes object. Fixes the mismatch between
implementation and naming convention by updating argument name from
"string" to "bytes_in". Updates associated docstring accordingly.
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The copyright and author stuff is not necessary, out-of-date,
and inconsistent. It takes up visual space and is a pain to
police everyone doing the same thing on the top of the module.
Git handles authorship in a comprehensive and authoritative way.
The LICENSE.txt file applies to all project code.
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* Fixed problem in documentation view of this function
* Replacing `Return` to `Returns` in function docs
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Use sorted graph to find edges. Includes tests.
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This commit changes the implementation of the `write_graph6` function so
that it makes better use of iterators and writes directly to file
instead of buffering the entire encoding of the graph as a string in
memory before writing. This commit also removes the `generate_graph6`
function, since it's functionality can be simulated by using the
`write_graph6` function to write to a file.
This change requires updating the code to explicitly require `bytes`
when reading and writing graph6 data. This means updating `sparse6` code
as well.
Finally, this commit standardizes the graph6 and sparse6
encoding/decoding functions into four functions each: `to_graph6_bytes`,
`from_graph6_bytes`, `read_graph6`, and `write_graph6`, and the
corresponding functions for sparse6.
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Some interesting finds here and one that I don't understand.
Using OrderedGraph is helpful in writing tests of output to get deterministic order. But OrderedDict __repr__ is 'OrderedDict()' so I made an ugly modification in generate_edgelist.
I don't understand why the sparse6 write requires the sorted order to pass the tests. There might be a bug here.
I fixed a bug in graph6 where the nodes needed to be sorted
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Also remove outdated sphinx.ext.pngmath (RTD uses mathjax now)
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Use read_graph6 instead of read_graph6_list
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