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author | njsmith <njs@pobox.com> | 2013-06-05 08:36:40 -0700 |
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committer | njsmith <njs@pobox.com> | 2013-06-05 08:36:40 -0700 |
commit | d307ff623dc58cd7afd02e99805e409edd5ba179 (patch) | |
tree | 4e0fd365dd610bb9ea479b8ec9ad376695b2fabe /numpy | |
parent | 7e92df5c483c4a466315be1df7ee077c956a32b0 (diff) | |
parent | 1d9607ac4a1fc7270ee0686b7e3f20b2ce709bf2 (diff) | |
download | numpy-d307ff623dc58cd7afd02e99805e409edd5ba179.tar.gz |
Merge pull request #3387 from WarrenWeckesser/norm-axis
ENH: linalg: Add an `axis` argument to linalg.norm
Diffstat (limited to 'numpy')
-rw-r--r-- | numpy/linalg/linalg.py | 143 | ||||
-rw-r--r-- | numpy/linalg/tests/test_linalg.py | 117 |
2 files changed, 209 insertions, 51 deletions
diff --git a/numpy/linalg/linalg.py b/numpy/linalg/linalg.py index ae0da3685..f11f905f7 100644 --- a/numpy/linalg/linalg.py +++ b/numpy/linalg/linalg.py @@ -20,10 +20,10 @@ import warnings from numpy.core import array, asarray, zeros, empty, transpose, \ intc, single, double, csingle, cdouble, inexact, complexfloating, \ - newaxis, ravel, all, Inf, dot, add, multiply, identity, sqrt, \ - maximum, flatnonzero, diagonal, arange, fastCopyAndTranspose, sum, \ - isfinite, size, finfo, absolute, log, exp, errstate, geterrobj -from numpy.lib import triu + newaxis, ravel, all, Inf, dot, add, multiply, sqrt, maximum, \ + fastCopyAndTranspose, sum, isfinite, size, finfo, errstate, \ + geterrobj, float128, rollaxis, amin, amax +from numpy.lib import triu, asfarray from numpy.linalg import lapack_lite, _umath_linalg from numpy.matrixlib.defmatrix import matrix_power from numpy.compat import asbytes @@ -1865,7 +1865,38 @@ def lstsq(a, b, rcond=-1): st = s[:min(n, m)].copy().astype(result_real_t) return wrap(x), wrap(resids), results['rank'], st -def norm(x, ord=None): + +def _multi_svd_norm(x, row_axis, col_axis, op): + """Compute the exteme singular values of the 2-D matrices in `x`. + + This is a private utility function used by numpy.linalg.norm(). + + Parameters + ---------- + x : ndarray + row_axis, col_axis : int + The axes of `x` that hold the 2-D matrices. + op : callable + This should be either numpy.amin or numpy.amax. + + Returns + ------- + result : float or ndarray + If `x` is 2-D, the return values is a float. + Otherwise, it is an array with ``x.ndim - 2`` dimensions. + The return values are either the minimum or maximum of the + singular values of the matrices, depending on whether `op` + is `numpy.amin` or `numpy.amax`. + + """ + if row_axis > col_axis: + row_axis -= 1 + y = rollaxis(rollaxis(x, col_axis, x.ndim), row_axis, -1) + result = op(svd(y, compute_uv=0), axis=-1) + return result + + +def norm(x, ord=None, axis=None): """ Matrix or vector norm. @@ -1875,16 +1906,22 @@ def norm(x, ord=None): Parameters ---------- - x : {(M,), (M, N)} array_like - Input array. + x : array_like + Input array. If `axis` is None, `x` must be 1-D or 2-D. ord : {non-zero int, inf, -inf, 'fro'}, optional Order of the norm (see table under ``Notes``). inf means numpy's `inf` object. + axis : {int, 2-tuple of ints, None}, optional + If `axis` is an integer, it specifies the axis of `x` along which to + compute the vector norms. If `axis` is a 2-tuple, it specifies the + axes that hold 2-D matrices, and the matrix norms of these matrices + are computed. If `axis` is None then either a vector norm (when `x` + is 1-D) or a matrix norm (when `x` is 2-D) is returned. Returns ------- - n : float - Norm of the matrix or vector. + n : float or ndarray + Norm of the matrix or vector(s). Notes ----- @@ -1967,44 +2004,96 @@ def norm(x, ord=None): >>> LA.norm(a, -3) nan + Using the `axis` argument to compute vector norms: + + >>> c = np.array([[ 1, 2, 3], + ... [-1, 1, 4]]) + >>> LA.norm(c, axis=0) + array([ 1.41421356, 2.23606798, 5. ]) + >>> LA.norm(c, axis=1) + array([ 3.74165739, 4.24264069]) + >>> LA.norm(c, ord=1, axis=1) + array([6, 6]) + + Using the `axis` argument to compute matrix norms: + + >>> m = np.arange(8).reshape(2,2,2) + >>> LA.norm(m, axis=(1,2)) + array([ 3.74165739, 11.22497216]) + >>> LA.norm(m[0, :, :]), LA.norm(m[1, :, :]) + (3.7416573867739413, 11.224972160321824) + """ x = asarray(x) - if ord is None: # check the default case first and handle it immediately + + # Check the default case first and handle it immediately. + if ord is None and axis is None: + s = (x.conj() * x).real return sqrt(add.reduce((x.conj() * x).ravel().real)) + # Normalize the `axis` argument to a tuple. + if axis is None: + axis = tuple(range(x.ndim)) + elif not isinstance(axis, tuple): + axis = (axis,) + nd = x.ndim - if nd == 1: + if len(axis) == 1: if ord == Inf: - return abs(x).max() + return abs(x).max(axis=axis) elif ord == -Inf: - return abs(x).min() + return abs(x).min(axis=axis) elif ord == 0: - return (x != 0).sum() # Zero norm + # Zero norm + return (x != 0).sum(axis=axis) elif ord == 1: - return abs(x).sum() # special case for speedup - elif ord == 2: - return sqrt(((x.conj()*x).real).sum()) # special case for speedup + # special case for speedup + return add.reduce(abs(x), axis=axis) + elif ord is None or ord == 2: + # special case for speedup + s = (x.conj() * x).real + return sqrt(add.reduce(s, axis=axis)) else: try: ord + 1 except TypeError: raise ValueError("Invalid norm order for vectors.") - return ((abs(x)**ord).sum())**(1.0/ord) - elif nd == 2: + if x.dtype != float128: + # Convert to a float type, so integer arrays give + # float results. Don't apply asfarray to float128 arrays, + # because it will downcast to float64. + absx = asfarray(abs(x)) + return add.reduce(absx**ord, axis=axis)**(1.0/ord) + elif len(axis) == 2: + row_axis, col_axis = axis + if not (-x.ndim <= row_axis < x.ndim and + -x.ndim <= col_axis < x.ndim): + raise ValueError('Invalid axis %r for an array with shape %r' % + (axis, x.shape)) + if row_axis % x.ndim == col_axis % x.ndim: + raise ValueError('Duplicate axes given.') if ord == 2: - return svd(x, compute_uv=0).max() + return _multi_svd_norm(x, row_axis, col_axis, amax) elif ord == -2: - return svd(x, compute_uv=0).min() + return _multi_svd_norm(x, row_axis, col_axis, amin) elif ord == 1: - return abs(x).sum(axis=0).max() + if col_axis > row_axis: + col_axis -= 1 + return add.reduce(abs(x), axis=row_axis).max(axis=col_axis) elif ord == Inf: - return abs(x).sum(axis=1).max() + if row_axis > col_axis: + row_axis -= 1 + return add.reduce(abs(x), axis=col_axis).max(axis=row_axis) elif ord == -1: - return abs(x).sum(axis=0).min() + if col_axis > row_axis: + col_axis -= 1 + return add.reduce(abs(x), axis=row_axis).min(axis=col_axis) elif ord == -Inf: - return abs(x).sum(axis=1).min() - elif ord in ['fro','f']: - return sqrt(add.reduce((x.conj() * x).real.ravel())) + if row_axis > col_axis: + row_axis -= 1 + return add.reduce(abs(x), axis=col_axis).min(axis=row_axis) + elif ord in [None, 'fro', 'f']: + return sqrt(add.reduce((x.conj() * x).real, axis=axis)) else: raise ValueError("Invalid norm order for matrices.") else: diff --git a/numpy/linalg/tests/test_linalg.py b/numpy/linalg/tests/test_linalg.py index 2dc55ab5e..881311c94 100644 --- a/numpy/linalg/tests/test_linalg.py +++ b/numpy/linalg/tests/test_linalg.py @@ -515,30 +515,37 @@ class TestEigh(HermitianTestCase, HermitianGeneralizedTestCase, TestCase): class _TestNorm(TestCase): + dt = None dec = None + def test_empty(self): assert_equal(norm([]), 0.0) assert_equal(norm(array([], dtype=self.dt)), 0.0) assert_equal(norm(atleast_2d(array([], dtype=self.dt))), 0.0) def test_vector(self): - a = [1.0,2.0,3.0,4.0] - b = [-1.0,-2.0,-3.0,-4.0] - c = [-1.0, 2.0,-3.0, 4.0] + a = [1, 2, 3, 4] + b = [-1, -2, -3, -4] + c = [-1, 2, -3, 4] def _test(v): - np.testing.assert_almost_equal(norm(v), 30**0.5, decimal=self.dec) - np.testing.assert_almost_equal(norm(v,inf), 4.0, decimal=self.dec) - np.testing.assert_almost_equal(norm(v,-inf), 1.0, decimal=self.dec) - np.testing.assert_almost_equal(norm(v,1), 10.0, decimal=self.dec) - np.testing.assert_almost_equal(norm(v,-1), 12.0/25, - decimal=self.dec) - np.testing.assert_almost_equal(norm(v,2), 30**0.5, - decimal=self.dec) - np.testing.assert_almost_equal(norm(v,-2), ((205./144)**-0.5), - decimal=self.dec) - np.testing.assert_almost_equal(norm(v,0), 4, decimal=self.dec) + np.testing.assert_almost_equal(norm(v), 30**0.5, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, inf), 4.0, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, -inf), 1.0, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, 1), 10.0, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, -1), 12.0/25, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, 2), 30**0.5, + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, -2), ((205./144)**-0.5), + decimal=self.dec) + np.testing.assert_almost_equal(norm(v, 0), 4, + decimal=self.dec) for v in (a, b, c,): _test(v) @@ -548,25 +555,82 @@ class _TestNorm(TestCase): _test(v) def test_matrix(self): - A = matrix([[1.,3.],[5.,7.]], dtype=self.dt) - A = matrix([[1.,3.],[5.,7.]], dtype=self.dt) + A = matrix([[1, 3], [5, 7]], dtype=self.dt) assert_almost_equal(norm(A), 84**0.5) - assert_almost_equal(norm(A,'fro'), 84**0.5) - assert_almost_equal(norm(A,inf), 12.0) - assert_almost_equal(norm(A,-inf), 4.0) - assert_almost_equal(norm(A,1), 10.0) - assert_almost_equal(norm(A,-1), 6.0) - assert_almost_equal(norm(A,2), 9.1231056256176615) - assert_almost_equal(norm(A,-2), 0.87689437438234041) + assert_almost_equal(norm(A, 'fro'), 84**0.5) + assert_almost_equal(norm(A, inf), 12.0) + assert_almost_equal(norm(A, -inf), 4.0) + assert_almost_equal(norm(A, 1), 10.0) + assert_almost_equal(norm(A, -1), 6.0) + assert_almost_equal(norm(A, 2), 9.1231056256176615) + assert_almost_equal(norm(A, -2), 0.87689437438234041) self.assertRaises(ValueError, norm, A, 'nofro') self.assertRaises(ValueError, norm, A, -3) self.assertRaises(ValueError, norm, A, 0) + def test_axis(self): + # Vector norms. + # Compare the use of `axis` with computing the norm of each row + # or column separately. + A = array([[1, 2, 3], [4, 5, 6]], dtype=self.dt) + for order in [None, -1, 0, 1, 2, 3, np.Inf, -np.Inf]: + expected0 = [norm(A[:,k], ord=order) for k in range(A.shape[1])] + assert_almost_equal(norm(A, ord=order, axis=0), expected0) + expected1 = [norm(A[k,:], ord=order) for k in range(A.shape[0])] + assert_almost_equal(norm(A, ord=order, axis=1), expected1) + + # Matrix norms. + B = np.arange(1, 25, dtype=self.dt).reshape(2, 3, 4) + + for order in [None, -2, 2, -1, 1, np.Inf, -np.Inf, 'fro']: + assert_almost_equal(norm(A, ord=order), norm(A, ord=order, + axis=(0, 1))) + + n = norm(B, ord=order, axis=(1, 2)) + expected = [norm(B[k], ord=order) for k in range(B.shape[0])] + assert_almost_equal(n, expected) + + n = norm(B, ord=order, axis=(2, 1)) + expected = [norm(B[k].T, ord=order) for k in range(B.shape[0])] + assert_almost_equal(n, expected) + + n = norm(B, ord=order, axis=(0, 2)) + expected = [norm(B[:,k,:], ord=order) for k in range(B.shape[1])] + assert_almost_equal(n, expected) + + n = norm(B, ord=order, axis=(0, 1)) + expected = [norm(B[:,:,k], ord=order) for k in range(B.shape[2])] + assert_almost_equal(n, expected) + + def test_bad_args(self): + # Check that bad arguments raise the appropriate exceptions. + + A = array([[1, 2, 3], [4, 5, 6]], dtype=self.dt) + B = np.arange(1, 25, dtype=self.dt).reshape(2, 3, 4) + + # Using `axis=<integer>` or passing in a 1-D array implies vector + # norms are being computed, so also using `ord='fro'` raises a + # ValueError. + self.assertRaises(ValueError, norm, A, 'fro', 0) + self.assertRaises(ValueError, norm, [3, 4], 'fro', None) + + # Similarly, norm should raise an exception when ord is any finite + # number other than 1, 2, -1 or -2 when computing matrix norms. + for order in [0, 3]: + self.assertRaises(ValueError, norm, A, order, None) + self.assertRaises(ValueError, norm, A, order, (0, 1)) + self.assertRaises(ValueError, norm, B, order, (1, 2)) + + # Invalid axis + self.assertRaises(ValueError, norm, B, None, 3) + self.assertRaises(ValueError, norm, B, None, (2, 3)) + self.assertRaises(ValueError, norm, B, None, (0, 1, 2)) + class TestNormDouble(_TestNorm): dt = np.double - dec= 12 + dec = 12 class TestNormSingle(_TestNorm): @@ -574,6 +638,11 @@ class TestNormSingle(_TestNorm): dec = 6 +class TestNormInt64(_TestNorm): + dt = np.int64 + dec = 12 + + class TestMatrixRank(object): def test_matrix_rank(self): # Full rank matrix |