1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
|
from cpython.pycapsule cimport PyCapsule_New
try:
from threading import Lock
except ImportError:
from dummy_threading import Lock
import numpy as np
from .common cimport *
from .distributions cimport bitgen_t
from .entropy import random_entropy, seed_by_array
__all__ = ['ThreeFry']
np.import_array()
DEF THREEFRY_BUFFER_SIZE=4
cdef extern from 'src/threefry/threefry.h':
struct s_r123array4x64:
uint64_t v[4]
ctypedef s_r123array4x64 r123array4x64
ctypedef r123array4x64 threefry4x64_key_t
ctypedef r123array4x64 threefry4x64_ctr_t
struct s_threefry_state:
threefry4x64_ctr_t *ctr
threefry4x64_key_t *key
int buffer_pos
uint64_t buffer[THREEFRY_BUFFER_SIZE]
int has_uint32
uint32_t uinteger
ctypedef s_threefry_state threefry_state
uint64_t threefry_next64(threefry_state *state) nogil
uint32_t threefry_next32(threefry_state *state) nogil
void threefry_jump(threefry_state *state)
void threefry_advance(uint64_t *step, threefry_state *state)
cdef uint64_t threefry_uint64(void* st) nogil:
return threefry_next64(<threefry_state *>st)
cdef uint32_t threefry_uint32(void *st) nogil:
return threefry_next32(<threefry_state *> st)
cdef double threefry_double(void* st) nogil:
return uint64_to_double(threefry_next64(<threefry_state *>st))
cdef class ThreeFry:
"""
ThreeFry(seed=None, counter=None, key=None)
Container for the ThreeFry (4x64) pseudo-random number generator.
Parameters
----------
seed : {None, int, array_like}, optional
Random seed initializing the pseudo-random number generator.
Can be an integer in [0, 2**64-1], array of integers in
[0, 2**64-1] or ``None`` (the default). If `seed` is ``None``,
data will be read from ``/dev/urandom`` (or the Windows analog)
if available. If unavailable, a hash of the time and process ID is
used.
counter : {None, int, array_like}, optional
Counter to use in the ThreeFry state. Can be either
a Python int in [0, 2**256) or a 4-element uint64 array.
If not provided, the RNG is initialized at 0.
key : {None, int, array_like}, optional
Key to use in the ThreeFry state. Unlike seed, which is run through
another RNG before use, the value in key is directly set. Can be either
a Python int in [0, 2**256) or a 4-element uint64 array.
key and seed cannot both be used.
Attributes
----------
lock: threading.Lock
Lock instance that is shared so that the same bit git generator can
be used in multiple Generators without corrupting the state. Code that
generates values from a bit generator should hold the bit generator's
lock.
Notes
-----
ThreeFry is a 64-bit PRNG that uses a counter-based design based on
weaker (and faster) versions of cryptographic functions [1]_. Instances
using different values of the key produce independent sequences. ``ThreeFry``
has a period of :math:`2^{256} - 1` and supports arbitrary advancing and
jumping the sequence in increments of :math:`2^{128}`. These features allow
multiple non-overlapping sequences to be generated.
``ThreeFry`` provides a capsule containing function pointers that produce
doubles, and unsigned 32 and 64- bit integers. These are not
directly consumable in Python and must be consumed by a ``Generator``
or similar object that supports low-level access.
See ``Philox`` for a closely related PRNG.
**State and Seeding**
The ``ThreeFry`` state vector consists of a 2 256-bit values encoded as
4-element uint64 arrays. One is a counter which is incremented by 1 for
every 4 64-bit randoms produced. The second is a key which determined
the sequence produced. Using different keys produces independent
sequences.
``ThreeFry`` is seeded using either a single 64-bit unsigned integer
or a vector of 64-bit unsigned integers. In either case, the seed is
used as an input for a second random number generator,
SplitMix64, and the output of this PRNG function is used as the initial state.
Using a single 64-bit value for the seed can only initialize a small range of
the possible initial state values.
**Parallel Features**
``ThreeFry`` can be used in parallel applications by calling the ``jumped``
method to advances the state as-if :math:`2^{128}` random numbers have
been generated. Alternatively, ``advance`` can be used to advance the
counter for any positive step in [0, 2**256). When using ``jumped``, all
generators should be chained to ensure that the segments come from the same
sequence.
>>> from numpy.random import Generator, ThreeFry
>>> bit_generator = ThreeFry(1234)
>>> rg = []
>>> for _ in range(10):
... rg.append(Generator(bit_generator))
... # Chain the BitGenerators
... bit_generator = bit_generator.jumped()
Alternatively, ``ThreeFry`` can be used in parallel applications by using
a sequence of distinct keys where each instance uses different key.
>>> key = 2**196 + 2**132 + 2**65 + 2**33 + 2**17 + 2**9
>>> rg = [Generator(ThreeFry(key=key+i)) for i in range(10)]
**Compatibility Guarantee**
``ThreeFry`` makes a guarantee that a fixed seed and will always produce
the same random integer stream.
Examples
--------
>>> from numpy.random import Generator, ThreeFry
>>> rg = Generator(ThreeFry(1234))
>>> rg.standard_normal()
0.123 # random
References
----------
.. [1] John K. Salmon, Mark A. Moraes, Ron O. Dror, and David E. Shaw,
"Parallel Random Numbers: As Easy as 1, 2, 3," Proceedings of
the International Conference for High Performance Computing,
Networking, Storage and Analysis (SC11), New York, NY: ACM, 2011.
"""
cdef threefry_state rng_state
cdef threefry4x64_ctr_t threefry_ctr
cdef threefry4x64_key_t threefry_key
cdef bitgen_t _bitgen
cdef public object capsule
cdef object _ctypes
cdef object _cffi
cdef public object lock
def __init__(self, seed=None, counter=None, key=None):
self.rng_state.ctr = &self.threefry_ctr
self.rng_state.key = &self.threefry_key
self.seed(seed, counter, key)
self.lock = Lock()
self._bitgen.state = <void *>&self.rng_state
self._bitgen.next_uint64 = &threefry_uint64
self._bitgen.next_uint32 = &threefry_uint32
self._bitgen.next_double = &threefry_double
self._bitgen.next_raw = &threefry_uint64
self._ctypes = None
self._cffi = None
cdef const char *name = 'BitGenerator'
self.capsule = PyCapsule_New(<void *>&self._bitgen, name, NULL)
# Pickling support:
def __getstate__(self):
return self.state
def __setstate__(self, state):
self.state = state
def __reduce__(self):
from ._pickle import __bit_generator_ctor
return __bit_generator_ctor, (self.state['bit_generator'],), self.state
cdef _reset_state_variables(self):
self.rng_state.has_uint32 = 0
self.rng_state.uinteger = 0
self.rng_state.buffer_pos = THREEFRY_BUFFER_SIZE
for i in range(THREEFRY_BUFFER_SIZE):
self.rng_state.buffer[i] = 0
def random_raw(self, size=None, output=True):
"""
random_raw(self, size=None)
Return randoms as generated by the underlying BitGenerator
Parameters
----------
size : int or tuple of ints, optional
Output shape. If the given shape is, e.g., ``(m, n, k)``, then
``m * n * k`` samples are drawn. Default is None, in which case a
single value is returned.
output : bool, optional
Output values. Used for performance testing since the generated
values are not returned.
Returns
-------
out : uint or ndarray
Drawn samples.
Notes
-----
This method directly exposes the the raw underlying pseudo-random
number generator. All values are returned as unsigned 64-bit
values irrespective of the number of bits produced by the PRNG.
See the class docstring for the number of bits returned.
"""
return random_raw(&self._bitgen, self.lock, size, output)
def _benchmark(self, Py_ssize_t cnt, method=u'uint64'):
return benchmark(&self._bitgen, self.lock, cnt, method)
def seed(self, seed=None, counter=None, key=None):
"""
seed(seed=None, counter=None, key=None)
Seed the generator.
This method is called when ``ThreeFry`` is initialized. It can be
called again to re-seed the generator. For details, see
``ThreeFry``.
Parameters
----------
seed : int, optional
Seed for ``ThreeFry``.
counter : {None, int array}, optional
Positive integer less than 2**256 containing the counter position
or a 4 element array of uint64 containing the counter
key : {None, int, array}, optional
Positive integer less than 2**256 containing the key
or a 4 element array of uint64 containing the key. key and
seed cannot be simultaneously used.
Raises
------
ValueError
If values are out of range for the PRNG.
Notes
-----
The two representation of the counter and key are related through
array[i] = (value // 2**(64*i)) % 2**64.
"""
if seed is not None and key is not None:
raise ValueError('seed and key cannot be both used')
if key is None:
if seed is None:
try:
state = random_entropy(8)
except RuntimeError:
state = random_entropy(8, 'fallback')
state = state.view(np.uint64)
else:
state = seed_by_array(seed, 4)
for i in range(4):
self.rng_state.key.v[i] = state[i]
else:
key = int_to_array(key, 'key', 256, 64)
for i in range(4):
self.rng_state.key.v[i] = key[i]
counter = 0 if counter is None else counter
counter = int_to_array(counter, 'counter', 256, 64)
for i in range(4):
self.rng_state.ctr.v[i] = counter[i]
self._reset_state_variables()
@property
def state(self):
"""
Get or set the PRNG state
Returns
-------
state : dict
Dictionary containing the information required to describe the
state of the PRNG
"""
ctr = np.empty(4, dtype=np.uint64)
key = np.empty(4, dtype=np.uint64)
buffer = np.empty(THREEFRY_BUFFER_SIZE, dtype=np.uint64)
for i in range(4):
ctr[i] = self.rng_state.ctr.v[i]
key[i] = self.rng_state.key.v[i]
for i in range(THREEFRY_BUFFER_SIZE):
buffer[i] = self.rng_state.buffer[i]
state = {'counter': ctr, 'key': key}
return {'bit_generator': self.__class__.__name__,
'state': state,
'buffer': buffer,
'buffer_pos': self.rng_state.buffer_pos,
'has_uint32': self.rng_state.has_uint32,
'uinteger': self.rng_state.uinteger}
@state.setter
def state(self, value):
if not isinstance(value, dict):
raise TypeError('state must be a dict')
bitgen = value.get('bit_generator', '')
if bitgen != self.__class__.__name__:
raise ValueError('state must be for a {0} '
'PRNG'.format(self.__class__.__name__))
for i in range(4):
self.rng_state.ctr.v[i] = <uint64_t>value['state']['counter'][i]
self.rng_state.key.v[i] = <uint64_t>value['state']['key'][i]
for i in range(THREEFRY_BUFFER_SIZE):
self.rng_state.buffer[i] = <uint64_t>value['buffer'][i]
self.rng_state.has_uint32 = value['has_uint32']
self.rng_state.uinteger = value['uinteger']
self.rng_state.buffer_pos = value['buffer_pos']
cdef jump_inplace(self, iter):
"""
Jump state in-place
Not part of public API
Parameters
----------
iter : integer, positive
Number of times to jump the state of the rng.
"""
self.advance(iter * int(2**128))
def jumped(self, jumps=1):
"""
jumped(jumps=1)
Returns a new bit generator with the state jumped
The state of the returned big generator is jumped as-if
2**(128 * jumps) random numbers have been generated.
Parameters
----------
iter : integer, positive
Number of times to jump the state of the bit generator returned
Returns
-------
bit_generator : ThreeFry
New instance of generator jumped iter times
"""
cdef ThreeFry bit_generator
bit_generator = self.__class__()
bit_generator.state = self.state
bit_generator.jump_inplace(jumps)
return bit_generator
def advance(self, delta):
"""
advance(delta)
Advance the underlying RNG as-if delta draws have occurred.
Parameters
----------
delta : integer, positive
Number of draws to advance the RNG. Must be less than the
size state variable in the underlying RNG.
Returns
-------
self : ThreeFry
RNG advanced delta steps
Notes
-----
Advancing a RNG updates the underlying RNG state as-if a given
number of calls to the underlying RNG have been made. In general
there is not a one-to-one relationship between the number output
random values from a particular distribution and the number of
draws from the core RNG. This occurs for two reasons:
* The random values are simulated using a rejection-based method
and so, on average, more than one value from the underlying
RNG is required to generate an single draw.
* The number of bits required to generate a simulated value
differs from the number of bits generated by the underlying
RNG. For example, two 16-bit integer values can be simulated
from a single draw of a 32-bit RNG.
Advancing the RNG state resets any pre-computed random numbers.
This is required to ensure exact reproducibility.
"""
delta = wrap_int(delta, 256)
cdef np.ndarray delta_a
delta_a = int_to_array(delta, 'step', 256, 64)
threefry_advance(<uint64_t *>delta_a.data, &self.rng_state)
self._reset_state_variables()
return self
@property
def ctypes(self):
"""
ctypes interface
Returns
-------
interface : namedtuple
Named tuple containing ctypes wrapper
* state_address - Memory address of the state struct
* state - pointer to the state struct
* next_uint64 - function pointer to produce 64 bit integers
* next_uint32 - function pointer to produce 32 bit integers
* next_double - function pointer to produce doubles
* bitgen - pointer to the BitGenerator struct
"""
if self._ctypes is None:
self._ctypes = prepare_ctypes(&self._bitgen)
return self._ctypes
@property
def cffi(self):
"""
CFFI interface
Returns
-------
interface : namedtuple
Named tuple containing CFFI wrapper
* state_address - Memory address of the state struct
* state - pointer to the state struct
* next_uint64 - function pointer to produce 64 bit integers
* next_uint32 - function pointer to produce 32 bit integers
* next_double - function pointer to produce doubles
* bitgen - pointer to the BitGenerator struct
"""
if self._cffi is not None:
return self._cffi
self._cffi = prepare_cffi(&self._bitgen)
return self._cffi
|