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# These classes implement a doctest runner plugin for nose.
# Because this module imports nose directly, it should not
# be used except by nosetester.py to avoid a general NumPy
# dependency on nose.
import os
import doctest
from nose.plugins import doctests as npd
from nose.plugins.base import Plugin
from nose.util import src, tolist
import numpy
from nosetester import get_package_name
import inspect
_doctest_ignore = ['generate_numpy_api.py', 'scons_support.py',
'setupscons.py', 'setup.py']
# All the classes in this module begin with 'numpy' to clearly distinguish them
# from the plethora of very similar names from nose/unittest/doctest
#-----------------------------------------------------------------------------
# Modified version of the one in the stdlib, that fixes a python bug (doctests
# not found in extension modules, http://bugs.python.org/issue3158)
class numpyDocTestFinder(doctest.DocTestFinder):
def _from_module(self, module, object):
"""
Return true if the given object is defined in the given
module.
"""
if module is None:
#print '_fm C1' # dbg
return True
elif inspect.isfunction(object):
#print '_fm C2' # dbg
return module.__dict__ is object.func_globals
elif inspect.isbuiltin(object):
#print '_fm C2-1' # dbg
return module.__name__ == object.__module__
elif inspect.isclass(object):
#print '_fm C3' # dbg
return module.__name__ == object.__module__
elif inspect.ismethod(object):
# This one may be a bug in cython that fails to correctly set the
# __module__ attribute of methods, but since the same error is easy
# to make by extension code writers, having this safety in place
# isn't such a bad idea
#print '_fm C3-1' # dbg
return module.__name__ == object.im_class.__module__
elif inspect.getmodule(object) is not None:
#print '_fm C4' # dbg
#print 'C4 mod',module,'obj',object # dbg
return module is inspect.getmodule(object)
elif hasattr(object, '__module__'):
#print '_fm C5' # dbg
return module.__name__ == object.__module__
elif isinstance(object, property):
#print '_fm C6' # dbg
return True # [XX] no way not be sure.
else:
raise ValueError("object must be a class or function")
def _find(self, tests, obj, name, module, source_lines, globs, seen):
"""
Find tests for the given object and any contained objects, and
add them to `tests`.
"""
doctest.DocTestFinder._find(self,tests, obj, name, module,
source_lines, globs, seen)
# Below we re-run pieces of the above method with manual modifications,
# because the original code is buggy and fails to correctly identify
# doctests in extension modules.
# Local shorthands
from inspect import isroutine, isclass, ismodule
# Look for tests in a module's contained objects.
if inspect.ismodule(obj) and self._recurse:
for valname, val in obj.__dict__.items():
valname1 = '%s.%s' % (name, valname)
if ( (isroutine(val) or isclass(val))
and self._from_module(module, val) ):
self._find(tests, val, valname1, module, source_lines,
globs, seen)
# Look for tests in a class's contained objects.
if inspect.isclass(obj) and self._recurse:
#print 'RECURSE into class:',obj # dbg
for valname, val in obj.__dict__.items():
#valname1 = '%s.%s' % (name, valname) # dbg
#print 'N',name,'VN:',valname,'val:',str(val)[:77] # dbg
# Special handling for staticmethod/classmethod.
if isinstance(val, staticmethod):
val = getattr(obj, valname)
if isinstance(val, classmethod):
val = getattr(obj, valname).im_func
# Recurse to methods, properties, and nested classes.
if ((inspect.isfunction(val) or inspect.isclass(val) or
inspect.ismethod(val) or
isinstance(val, property)) and
self._from_module(module, val)):
valname = '%s.%s' % (name, valname)
self._find(tests, val, valname, module, source_lines,
globs, seen)
class numpyDocTestCase(npd.DocTestCase):
"""Proxy for DocTestCase: provides an address() method that
returns the correct address for the doctest case. Otherwise
acts as a proxy to the test case. To provide hints for address(),
an obj may also be passed -- this will be used as the test object
for purposes of determining the test address, if it is provided.
"""
# doctests loaded via find(obj) omit the module name
# so we need to override id, __repr__ and shortDescription
# bonus: this will squash a 2.3 vs 2.4 incompatiblity
def id(self):
name = self._dt_test.name
filename = self._dt_test.filename
if filename is not None:
pk = getpackage(filename)
if pk is not None and not name.startswith(pk):
name = "%s.%s" % (pk, name)
return name
# second-chance checker; if the default comparison doesn't
# pass, then see if the expected output string contains flags that
# tell us to ignore the output
class numpyOutputChecker(doctest.OutputChecker):
def check_output(self, want, got, optionflags):
ret = doctest.OutputChecker.check_output(self, want, got,
optionflags)
if not ret:
if "#random" in want:
return True
return ret
# Subclass nose.plugins.doctests.DocTestCase to work around a bug in
# its constructor that blocks non-default arguments from being passed
# down into doctest.DocTestCase
class numpyDocTestCase(npd.DocTestCase):
def __init__(self, test, optionflags=0, setUp=None, tearDown=None,
checker=None, obj=None, result_var='_'):
self._result_var = result_var
self._nose_obj = obj
doctest.DocTestCase.__init__(self, test,
optionflags=optionflags,
setUp=setUp, tearDown=tearDown,
checker=checker)
print_state = numpy.get_printoptions()
class numpyDoctest(npd.Doctest):
name = 'numpydoctest' # call nosetests with --with-numpydoctest
enabled = True
def options(self, parser, env=os.environ):
Plugin.options(self, parser, env)
def configure(self, options, config):
Plugin.configure(self, options, config)
self.doctest_tests = True
self.extension = tolist(options.doctestExtension)
self.finder = numpyDocTestFinder()
self.parser = doctest.DocTestParser()
# Turn on whitespace normalization, set a minimal execution context
# for doctests, implement a "#random" directive to allow executing a
# command while ignoring its output.
def loadTestsFromModule(self, module):
if not self.matches(module.__name__):
npd.log.debug("Doctest doesn't want module %s", module)
return
try:
tests = self.finder.find(module)
except AttributeError:
# nose allows module.__test__ = False; doctest does not and
# throws AttributeError
return
if not tests:
return
tests.sort()
module_file = src(module.__file__)
for test in tests:
if not test.examples:
continue
if not test.filename:
test.filename = module_file
pkg_name = get_package_name(os.path.dirname(test.filename))
# Each doctest should execute in an environment equivalent to
# starting Python and executing "import numpy as np", and,
# for SciPy packages, an additional import of the local
# package (so that scipy.linalg.basic.py's doctests have an
# implicit "from scipy import linalg" as well.
#
# Note: __file__ allows the doctest in NoseTester to run
# without producing an error
test.globs = {'__builtins__':__builtins__,
'__file__':'__main__',
'__name__':'__main__',
'np':numpy}
# add appropriate scipy import for SciPy tests
if 'scipy' in pkg_name:
p = pkg_name.split('.')
p1 = '.'.join(p[:-1])
p2 = p[-1]
test.globs[p2] = __import__(pkg_name, test.globs, {}, [p2])
print 'additional import for %s: from %s import %s' % (test.filename, p1, p2)
print ' (%s): %r' % (pkg_name, test.globs[p2])
# always use whitespace and ellipsis options
optionflags = doctest.NORMALIZE_WHITESPACE | doctest.ELLIPSIS
yield numpyDocTestCase(test,
optionflags=optionflags,
checker=numpyOutputChecker())
# Add an afterContext method to nose.plugins.doctests.Doctest in order
# to restore print options to the original state after each doctest
def afterContext(self):
numpy.set_printoptions(**print_state)
# Ignore NumPy-specific build files that shouldn't be searched for tests
def wantFile(self, file):
bn = os.path.basename(file)
if bn in _doctest_ignore:
return False
return npd.Doctest.wantFile(self, file)
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